Detailed information NTG0387146

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ35_RS05445
• Genome accession: NZ_CP051714
• Coordinates: 1143115..1144107 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-122
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1138115..1149107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ35_RS05415 (HHJ35_05415)	ispD	1138176..1138886 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HHJ35_RS05420 (HHJ35_05420)	ispF	1138886..1139365 (+)	480	WP_001219247.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ35_RS05425 (HHJ35_05425)	truD	1139362..1140411 (+)	1050	WP_000568928.1	tRNA pseudouridine(13) synthase TruD	-
HHJ35_RS05430 (HHJ35_05430)	surE	1140392..1141153 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ35_RS05435 (HHJ35_05435)	pcm	1141147..1141773 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HHJ35_RS05440 (HHJ35_05440)	nlpD	1141958..1143052 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ35_RS05445 (HHJ35_05445)	rpoS	1143115..1144107 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ35_RS05450 (HHJ35_05450)	-	1144285..1144836 (-)	552	WP_001179442.1	flavodoxin family protein	-
HHJ35_RS05455 (HHJ35_05455)	-	1145061..1146104 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
HHJ35_RS05460 (HHJ35_05460)	ygbN	1146247..1147611 (-)	1365	WP_000104443.1	GntP family transporter	-
HHJ35_RS05465 (HHJ35_05465)	ygbM	1147700..1148476 (-)	777	WP_001136908.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=387146 HHJ35_RS05445 WP_000081550.1 1143115..1144107(+) (rpoS) [Escherichia coli strain SCU-122]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=387146 HHJ35_RS05445 WP_000081550.1 1143115..1144107(+) (rpoS) [Escherichia coli strain SCU-122]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715