Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ELI_RS10075 Genome accession   NC_014624
Coordinates   2143522..2144217 (-) Length   231 a.a.
NCBI ID   WP_013380612.1    Uniprot ID   A0AB74EZS3
Organism   Eubacterium callanderi     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2138522..2149217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELI_RS10050 (ELI_2302) - 2138564..2139982 (-) 1419 WP_013380606.1 C69 family dipeptidase -
  ELI_RS10055 (ELI_2304) - 2140200..2141249 (-) 1050 WP_013380608.1 response regulator transcription factor -
  ELI_RS10060 (ELI_2305) - 2141331..2141573 (-) 243 WP_013380609.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ELI_RS10065 (ELI_2306) - 2141817..2142014 (+) 198 Protein_2016 secondary thiamine-phosphate synthase enzyme YjbQ -
  ELI_RS10070 (ELI_2307) - 2142070..2143509 (-) 1440 WP_013380611.1 sensor histidine kinase -
  ELI_RS10075 (ELI_2308) scnR 2143522..2144217 (-) 696 WP_013380612.1 response regulator transcription factor Regulator
  ELI_RS10080 (ELI_2309) - 2144372..2145280 (+) 909 WP_013380613.1 ATP-binding cassette domain-containing protein -
  ELI_RS10085 (ELI_2310) - 2145280..2146029 (+) 750 WP_013380614.1 ABC transporter permease -
  ELI_RS10090 (ELI_2311) - 2146042..2146776 (+) 735 WP_013380615.1 ABC transporter permease -
  ELI_RS10095 (ELI_2313) - 2147152..2148636 (-) 1485 WP_013380617.1 FGGY family carbohydrate kinase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25718.92 Da        Isoelectric Point: 4.9106

>NTDB_id=38709 ELI_RS10075 WP_013380612.1 2143522..2144217(-) (scnR) [Eubacterium callanderi]
MDYIKDKGILLVDDEPELLKLVHKILENEGFAKVYTASSMAEGMTVFLEKAPDMAVLDVMLPDGEGFELLKFIRGSSDIP
VLFLSARGNADDRFTGFGLGADDYIIKPFLPQELVFRITAILKRAYKNEAPTFILADATVDLDRAEIIRGEEILPLTAKE
HAILQKLYENAGKIVTIGALCDFVWEGDSYGYEKPLMAHIGRIREKIETNPSHPKSLITVKGLGYKLLVSK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=38709 ELI_RS10075 WP_013380612.1 2143522..2144217(-) (scnR) [Eubacterium callanderi]
ATGGATTACATTAAAGATAAAGGCATTCTTCTGGTCGACGATGAACCAGAGCTTTTAAAGCTGGTGCATAAGATACTCGA
AAATGAAGGATTTGCGAAGGTTTATACAGCGTCGAGCATGGCCGAGGGAATGACCGTTTTTCTGGAAAAAGCTCCGGATA
TGGCCGTGCTTGATGTGATGCTGCCAGATGGTGAAGGTTTTGAGCTGCTAAAATTCATCCGTGGATCCTCGGATATCCCG
GTGCTTTTTTTATCAGCCAGAGGCAATGCCGACGACCGGTTCACCGGCTTTGGTCTGGGAGCGGATGATTATATTATCAA
GCCCTTTCTGCCCCAGGAGCTTGTGTTCAGGATCACAGCTATTTTAAAACGTGCCTACAAAAACGAAGCGCCGACCTTTA
TCCTGGCTGACGCCACAGTAGATCTGGACCGCGCTGAGATTATCAGGGGAGAGGAGATTCTTCCCCTTACGGCCAAAGAG
CATGCCATTCTTCAAAAGCTCTATGAAAATGCAGGGAAAATTGTAACCATTGGCGCCCTCTGTGATTTTGTATGGGAGGG
CGACAGCTATGGCTATGAAAAACCGCTCATGGCTCATATCGGGCGTATCCGGGAAAAAATCGAGACTAACCCCAGCCATC
CAAAGTCTCTTATTACAGTCAAAGGGCTTGGCTATAAGCTGCTCGTAAGTAAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.435

99.567

0.502

Multiple sequence alignment