Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   FHP22_RS06650 Genome accession   NZ_CP044018
Coordinates   1356619..1357254 (+) Length   211 a.a.
NCBI ID   WP_152342358.1    Uniprot ID   -
Organism   Acinetobacter indicus strain HY20     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1351619..1362254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP22_RS06615 (FHP22_06615) kdsB 1351977..1352741 (+) 765 WP_104488987.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FHP22_RS06620 (FHP22_06620) - 1352750..1353733 (+) 984 WP_075166783.1 DNA polymerase III subunit delta' -
  FHP22_RS06625 (FHP22_06625) - 1353745..1354086 (+) 342 WP_005177501.1 PilZ domain-containing protein -
  FHP22_RS06630 (FHP22_06630) - 1354116..1354889 (+) 774 WP_005177502.1 TatD family hydrolase -
  FHP22_RS06635 (FHP22_06635) - 1354949..1355563 (+) 615 WP_005177503.1 TetR/AcrR family transcriptional regulator -
  FHP22_RS06640 (FHP22_06640) - 1355569..1356141 (+) 573 WP_152342356.1 type II secretion system protein -
  FHP22_RS06645 (FHP22_06645) xcpV 1356278..1356622 (+) 345 WP_035363078.1 type II secretion system protein Machinery gene
  FHP22_RS06650 (FHP22_06650) xcpW 1356619..1357254 (+) 636 WP_152342358.1 type II secretion system minor pseudopilin GspJ Machinery gene
  FHP22_RS06655 (FHP22_06655) gspK 1357300..1358247 (+) 948 WP_152342359.1 type II secretion system minor pseudopilin GspK -
  FHP22_RS06660 (FHP22_06660) - 1358395..1358991 (+) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  FHP22_RS06665 (FHP22_06665) ung 1359033..1359746 (+) 714 WP_005177514.1 uracil-DNA glycosylase -
  FHP22_RS06670 (FHP22_06670) - 1359743..1360867 (+) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  FHP22_RS06675 (FHP22_06675) tadA 1360871..1361392 (+) 522 WP_127799402.1 tRNA adenosine(34) deaminase TadA -
  FHP22_RS06680 (FHP22_06680) - 1361450..1361881 (+) 432 WP_127801722.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24148.46 Da        Isoelectric Point: 7.2000

>NTDB_id=387067 FHP22_RS06650 WP_152342358.1 1356619..1357254(+) (xcpW) [Acinetobacter indicus strain HY20]
MIKAKRGFTLVELLVAIAIFAVLSALGWKVFDYLVKVKDRNQWHEQQLEGLQGAYQQILRDSIQIVPLTANINNDIQPAL
VLQNGRFNFSKTGVTDPLQQGIAPTERIEYQYRADEQKLYRLKYANLHQSGQDQPVSSVLLDNVSQFQVSVLNPQELSNW
PDSSIDLNDNQQKRKLPKGIKINLTVQDVQYEWIFSLLNTDFLKSDNKTTS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=387067 FHP22_RS06650 WP_152342358.1 1356619..1357254(+) (xcpW) [Acinetobacter indicus strain HY20]
ATGATTAAGGCTAAACGCGGATTTACCCTGGTCGAGCTGCTGGTGGCCATTGCCATCTTTGCGGTGCTGTCTGCCTTAGG
CTGGAAAGTATTTGATTATCTGGTCAAGGTCAAAGACCGTAACCAGTGGCATGAACAGCAGTTAGAAGGATTGCAGGGTG
CCTATCAGCAAATCTTGCGTGACAGCATTCAGATTGTACCGCTGACGGCCAACATCAATAATGATATTCAGCCAGCTTTG
GTATTACAAAACGGCCGTTTTAATTTTAGCAAGACCGGTGTGACCGATCCTTTGCAGCAGGGCATTGCCCCCACTGAACG
GATTGAATATCAGTACCGGGCCGACGAACAAAAACTGTATCGTCTGAAATATGCCAATTTGCATCAATCCGGGCAGGATC
AGCCGGTTTCCAGCGTATTATTGGACAATGTTAGCCAGTTTCAGGTTAGTGTGCTGAATCCGCAGGAACTGAGTAACTGG
CCAGACAGCAGTATTGACTTAAATGATAATCAACAAAAACGCAAACTGCCAAAAGGCATTAAAATAAATTTAACCGTACA
AGATGTACAATATGAATGGATTTTTAGCCTGTTAAATACTGACTTCCTGAAATCAGACAATAAAACCACATCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type II secretion system (T2SS), protein J (T2SSJ)

(60-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.735

92.891

0.573

Multiple sequence alignment