Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   FHP22_RS02885 Genome accession   NZ_CP044018
Coordinates   606099..606896 (+) Length   265 a.a.
NCBI ID   WP_152342607.1    Uniprot ID   -
Organism   Acinetobacter indicus strain HY20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 601099..611896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP22_RS02855 (FHP22_02855) - 601415..601834 (+) 420 WP_005182377.1 hypothetical protein -
  FHP22_RS02860 (FHP22_02860) - 602002..603285 (+) 1284 WP_127799070.1 glycosyltransferase family 4 protein -
  FHP22_RS02865 (FHP22_02865) - 603318..603869 (+) 552 WP_104470590.1 phosphatase PAP2 family protein -
  FHP22_RS02870 (FHP22_02870) iscX 603964..604164 (+) 201 WP_127799072.1 Fe-S cluster assembly protein IscX -
  FHP22_RS02875 (FHP22_02875) ndk 604274..604705 (+) 432 WP_005182388.1 nucleoside-diphosphate kinase -
  FHP22_RS02880 (FHP22_02880) rlmN 604828..606063 (+) 1236 WP_005182389.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  FHP22_RS02885 (FHP22_02885) pilF 606099..606896 (+) 798 WP_152342607.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  FHP22_RS02890 (FHP22_02890) - 606887..607675 (+) 789 WP_127799074.1 helix-turn-helix domain-containing protein -
  FHP22_RS02895 (FHP22_02895) ispG 607698..608819 (+) 1122 WP_005182396.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  FHP22_RS02900 (FHP22_02900) hisS 608823..610118 (+) 1296 WP_127799076.1 histidine--tRNA ligase -
  FHP22_RS02905 (FHP22_02905) - 610149..610853 (+) 705 WP_005182401.1 YfgM family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 29978.91 Da        Isoelectric Point: 8.3587

>NTDB_id=387061 FHP22_RS02885 WP_152342607.1 606099..606896(+) (pilF) [Acinetobacter indicus strain HY20]
MYKFTTISTLCVAAWMSTGCQTTTPTLSPKDPEKAIQVRTQLAAEYLKSGDLDSAKRALDQALETDSRDSMANMMMGVLL
QQEGSKLNLEKADTYFKRAISADPNNAQARNNYGTYLYQVERYNDAIEQLSIAGATLGYDQRFRALENVGRIYLKLGDMA
NAEKSFKQALQANRDSYVSMLELAEIFYFNQQTPAASRMYEQFMRAVGQKNQGARALWIGIRVARANGDQLGQQVLVNQL
RALFPESQEYQRYLQLQHSTEAVWK

Nucleotide


Download         Length: 798 bp        

>NTDB_id=387061 FHP22_RS02885 WP_152342607.1 606099..606896(+) (pilF) [Acinetobacter indicus strain HY20]
ATGTATAAATTCACAACCATCAGCACATTGTGTGTGGCTGCATGGATGAGCACCGGCTGTCAAACCACAACTCCTACTTT
AAGTCCGAAAGATCCGGAAAAGGCAATTCAGGTGCGTACCCAGCTGGCGGCCGAGTATTTAAAATCGGGTGATTTAGACT
CGGCCAAACGTGCCCTGGATCAGGCACTGGAAACAGATTCGCGTGATTCTATGGCCAATATGATGATGGGCGTGCTGCTA
CAGCAAGAAGGTAGCAAGCTGAATCTGGAGAAGGCCGATACGTATTTCAAGCGTGCCATCTCTGCCGATCCGAACAATGC
GCAGGCGCGTAACAACTATGGTACGTATTTGTATCAGGTTGAACGCTATAATGATGCCATTGAACAGCTGAGTATTGCCG
GGGCAACACTCGGTTATGATCAACGTTTTCGTGCATTGGAAAACGTGGGGCGGATTTACCTGAAACTGGGCGATATGGCG
AATGCTGAAAAATCATTCAAGCAGGCCCTGCAGGCAAACCGTGACTCCTATGTTTCAATGTTAGAGTTGGCGGAAATTTT
TTATTTCAACCAGCAGACTCCTGCCGCATCCAGAATGTATGAACAGTTTATGCGTGCTGTGGGACAAAAAAATCAAGGTG
CGCGTGCCTTATGGATTGGGATCCGTGTTGCGCGTGCAAATGGCGATCAGTTAGGACAGCAGGTGCTGGTCAATCAGCTC
CGGGCATTGTTCCCTGAAAGCCAGGAATATCAACGTTATTTGCAATTACAGCACAGTACTGAGGCCGTATGGAAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(96-128)

Tetratricopeptide repeat (TPR_8)

(144-175)

Tetratricopeptide repeat (TPR_16)

(42-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

77.606

97.736

0.758
  pilF Acinetobacter baylyi ADP1

71.747

100

0.728

Multiple sequence alignment