Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E0W69_RS00315 Genome accession   NZ_CP044016
Coordinates   78647..80038 (-) Length   463 a.a.
NCBI ID   WP_131328052.1    Uniprot ID   A0A5P2FUP6
Organism   Rhizosphaericola mali strain B3-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 73647..85038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0W69_RS00295 (E0W69_000295) - 74237..74602 (+) 366 WP_131328048.1 hypothetical protein -
  E0W69_RS00300 (E0W69_000300) - 74756..75748 (+) 993 WP_131328049.1 ABC transporter ATP-binding protein -
  E0W69_RS00305 (E0W69_000305) - 75753..77114 (+) 1362 WP_131328050.1 HlyD family secretion protein -
  E0W69_RS00310 (E0W69_000310) - 77131..78588 (+) 1458 WP_131328051.1 TolC family protein -
  E0W69_RS00315 (E0W69_000315) radA 78647..80038 (-) 1392 WP_131328052.1 DNA repair protein RadA Machinery gene
  E0W69_RS00320 (E0W69_000320) - 80152..81105 (+) 954 WP_131328053.1 NAD(P)-dependent oxidoreductase -
  E0W69_RS00325 (E0W69_000325) - 81108..82916 (-) 1809 WP_131328054.1 hypothetical protein -
  E0W69_RS00330 (E0W69_000330) hisG 83216..84109 (+) 894 WP_131328055.1 ATP phosphoribosyltransferase -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 51423.97 Da        Isoelectric Point: 6.1951

>NTDB_id=387039 E0W69_RS00315 WP_131328052.1 78647..80038(-) (radA) [Rhizosphaericola mali strain B3-10]
MAKAKTVFFCSHCGYESVKWLGKCPACNEWNTFIEEVVDTGNAKDKNEWTQYNIKNNSTETTKNSKSQLLKDIQGGEEYR
ILTTDPELNRVLGGGIVAGSIILVAGEPGIGKSTLFLQNVLKLNQIKSLYISGEESASQIKMRADRLSIKNDNFYLLTET
STQAIFKEIKNIQPNLVIVDSIQTMESNLLEASPGSISQIRETAAEFQRFAKETGTPVFLIGHITKEGSIAGPKILEHMV
DVVLQFEGDRHYSYRILRTFKNRFGNTSELGIYEMSGAGMRAVTNPSEILITEKDEPLSGSAITASMEGQRPLLVEVQAL
VTPSVYGTPQRTVSGFDLRRLQLLLAVLEKRGGFQYGSKDVFVNIAGGMKVEDPSIDLAVICALLSSYEDVPIPSSICFA
GEVGLNGEIRAVNRIEQRISEAEKLGFEKIIVSKYNRKSFNIKKFSIEIIMLGKVEEVYKYFF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=387039 E0W69_RS00315 WP_131328052.1 78647..80038(-) (radA) [Rhizosphaericola mali strain B3-10]
ATGGCAAAAGCGAAAACCGTATTTTTTTGTTCTCATTGTGGTTATGAAAGTGTGAAATGGCTGGGAAAATGTCCAGCTTG
TAACGAATGGAATACATTTATCGAAGAAGTAGTTGATACAGGAAATGCAAAAGATAAAAATGAATGGACGCAGTACAACA
TAAAAAATAATAGCACAGAAACTACGAAAAATTCGAAATCTCAACTATTAAAAGATATTCAAGGAGGAGAAGAATATCGA
ATACTGACTACTGATCCGGAACTTAATCGCGTATTAGGTGGTGGTATAGTTGCTGGTAGTATCATATTGGTTGCAGGCGA
ACCAGGAATTGGAAAAAGTACCTTATTTCTTCAAAACGTACTCAAATTAAATCAAATCAAATCACTATATATAAGTGGTG
AAGAAAGCGCTTCGCAAATAAAAATGCGAGCAGATAGATTAAGCATTAAAAATGACAATTTTTATTTACTCACAGAAACT
TCGACACAAGCGATATTTAAAGAAATAAAAAACATACAACCCAATTTAGTCATAGTAGATTCTATTCAAACGATGGAAAG
CAATCTATTAGAAGCATCTCCAGGTAGTATCTCTCAAATACGCGAAACAGCTGCAGAGTTTCAAAGGTTTGCTAAAGAAA
CCGGAACTCCTGTTTTTCTAATAGGCCATATAACAAAAGAGGGAAGTATTGCTGGGCCCAAAATATTAGAGCACATGGTA
GATGTGGTGCTTCAATTTGAAGGAGATCGACATTATAGTTATCGTATACTTCGTACATTCAAAAATAGATTTGGGAATAC
TTCCGAATTGGGTATTTATGAAATGAGTGGAGCCGGCATGCGTGCGGTCACCAATCCATCCGAAATCTTAATTACTGAAA
AAGATGAGCCTTTAAGTGGCAGTGCTATAACTGCAAGTATGGAAGGACAAAGACCATTATTAGTGGAAGTTCAAGCATTA
GTGACACCAAGTGTATATGGCACGCCACAAAGAACAGTAAGCGGTTTTGATTTAAGAAGGTTACAACTCTTATTGGCTGT
ACTAGAAAAACGTGGAGGTTTTCAATATGGATCTAAAGATGTATTTGTAAATATTGCTGGAGGAATGAAGGTGGAAGATC
CATCAATTGATTTGGCGGTAATATGTGCATTACTTTCCTCTTACGAAGACGTGCCCATTCCATCATCTATATGCTTTGCT
GGCGAGGTTGGATTGAATGGAGAGATTAGAGCCGTAAACAGAATAGAACAAAGAATATCCGAAGCTGAAAAATTGGGATT
TGAAAAAATTATAGTTTCCAAATACAATAGAAAATCCTTTAATATAAAGAAATTTTCCATTGAAATAATTATGCTGGGTA
AAGTAGAAGAAGTATATAAATATTTCTTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(350-436)

AAA domain (AAA_25)

(81-228)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P2FUP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.485

99.784

0.484
  radA Streptococcus pneumoniae Rx1

48.06

100

0.482
  radA Streptococcus pneumoniae D39

48.06

100

0.482
  radA Streptococcus pneumoniae R6

48.06

100

0.482
  radA Streptococcus pneumoniae TIGR4

48.06

100

0.482
  radA Streptococcus mitis NCTC 12261

48.06

100

0.482
  radA Streptococcus mitis SK321

48.06

100

0.482

Multiple sequence alignment