Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F3Y33_RS00175 Genome accession   NZ_CP044009
Coordinates   34923..36326 (+) Length   467 a.a.
NCBI ID   WP_153269967.1    Uniprot ID   A0A5Q0C2G2
Organism   Rhizobium sp. BG6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 29923..41326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3Y33_RS00150 (F3Y33_00150) - 30888..31190 (-) 303 WP_153269971.1 AzlD domain-containing protein -
  F3Y33_RS00155 (F3Y33_00155) - 31187..31891 (-) 705 WP_153269970.1 AzlC family ABC transporter permease -
  F3Y33_RS00160 (F3Y33_00160) - 31963..32784 (-) 822 WP_153272358.1 AraC family transcriptional regulator -
  F3Y33_RS00165 (F3Y33_00165) alr 32963..34129 (+) 1167 WP_153269969.1 alanine racemase -
  F3Y33_RS00170 (F3Y33_00170) - 34135..34770 (-) 636 WP_153269968.1 LysE family translocator -
  F3Y33_RS00175 (F3Y33_00175) radA 34923..36326 (+) 1404 WP_153269967.1 DNA repair protein RadA Machinery gene
  F3Y33_RS00180 (F3Y33_00180) - 36420..37043 (+) 624 WP_153269966.1 CvpA family protein -
  F3Y33_RS00185 (F3Y33_00185) purF 37214..38704 (+) 1491 WP_153269965.1 amidophosphoribosyltransferase -
  F3Y33_RS00190 (F3Y33_00190) - 38784..39524 (+) 741 WP_153269964.1 SDR family NAD(P)-dependent oxidoreductase -
  F3Y33_RS00195 (F3Y33_00195) - 39532..40197 (-) 666 WP_153272357.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 49344.39 Da        Isoelectric Point: 6.6602

>NTDB_id=387018 F3Y33_RS00175 WP_153269967.1 34923..36326(+) (radA) [Rhizobium sp. BG6]
MAKARTNFICQSCGAVHNRWAGKCDNCGEWNTIVEEDLMGGIGGGPAKTPKKGRPVTLTALSGEIEEAPRIHTGISELDR
ALGGGFVRGSAVLIGGDPGIGKSTLLMQGAAALSRRGHRIIYVSGEEAVAQVRLRAQRLQAADTDVLLAAETNVEDILAT
VAEGKRPDLVIIDSIQTLWSELADSAPGTVTQVRTGVQSMIRFAKQTGAAMVLVGHVTKDGQIAGPRVVEHMVDAVLYFE
GDRGHHYRILRTVKNRFGPTDEIGVFEMSDKGLREVANPSELFLGERNEKSPGAAVFAGMEGTRPILVEVQALVAPTSLG
TPRRAVVGWDSARLSMILAVLEAHCGVRLGQHDVYLNIAGGYRITEPAADLAVASALVSSLAGIALPADCVYFGEVSLSG
AVRPVSHTSQRLKEAEKLGFSAALLPSASADLPKGSGGRWSEIESLPDLVARIAGSKGALRRVEEEV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=387018 F3Y33_RS00175 WP_153269967.1 34923..36326(+) (radA) [Rhizobium sp. BG6]
ATGGCGAAGGCCAGAACAAACTTCATCTGCCAGAGCTGCGGCGCGGTCCATAACCGCTGGGCGGGCAAGTGCGACAATTG
CGGCGAGTGGAACACCATCGTCGAAGAAGACCTGATGGGCGGCATCGGCGGCGGTCCTGCAAAGACGCCTAAGAAGGGCC
GGCCCGTGACGCTCACCGCTCTGTCGGGCGAAATCGAGGAAGCGCCCCGAATCCACACCGGTATCTCGGAACTCGACCGG
GCGCTCGGCGGCGGCTTCGTGCGGGGCTCGGCTGTGCTGATCGGCGGCGACCCCGGCATCGGCAAATCGACGCTGCTGAT
GCAGGGGGCAGCAGCGCTTTCGCGTCGCGGCCATCGGATCATCTATGTCTCGGGCGAAGAAGCGGTCGCGCAGGTGCGGC
TGCGGGCGCAACGCCTGCAGGCTGCCGATACCGACGTGCTGCTCGCTGCGGAAACAAACGTCGAGGACATTCTGGCGACG
GTGGCCGAGGGAAAACGGCCGGATCTCGTGATCATCGATTCCATCCAGACGCTCTGGAGCGAACTGGCCGACTCCGCTCC
AGGCACCGTCACGCAGGTCCGTACCGGCGTGCAGTCGATGATCCGCTTCGCCAAGCAGACGGGGGCGGCCATGGTTCTCG
TCGGACACGTCACCAAGGACGGGCAGATCGCGGGACCGCGCGTGGTCGAGCACATGGTCGATGCCGTGCTCTATTTCGAA
GGCGATCGCGGCCATCACTACCGCATCCTGCGCACCGTCAAGAACCGCTTCGGGCCGACGGACGAGATCGGTGTTTTCGA
GATGTCCGACAAGGGATTGCGCGAAGTCGCCAATCCCTCGGAGCTTTTCCTTGGCGAGCGCAACGAGAAATCGCCGGGAG
CTGCCGTCTTTGCCGGCATGGAGGGCACGCGTCCGATCCTCGTCGAAGTACAGGCGCTCGTTGCCCCGACATCGCTCGGC
ACCCCTCGCCGTGCCGTCGTCGGCTGGGATTCAGCGCGCCTGTCGATGATCCTTGCCGTCCTCGAAGCCCATTGCGGCGT
GCGGCTCGGCCAGCACGACGTCTATCTGAACATTGCTGGCGGCTATCGCATTACCGAGCCTGCGGCCGATCTTGCGGTCG
CTTCGGCGCTGGTTTCGTCGCTCGCCGGTATTGCCCTTCCCGCCGATTGTGTCTATTTCGGCGAAGTCAGCCTGTCGGGC
GCCGTCCGGCCGGTTTCACATACATCCCAGCGCCTCAAAGAAGCCGAGAAGCTGGGCTTTTCTGCCGCGCTGCTTCCCTC
GGCGTCAGCCGATCTGCCAAAGGGTTCCGGCGGCCGCTGGAGCGAGATCGAGAGCCTTCCGGACCTGGTTGCACGTATTG
CCGGGTCGAAAGGCGCACTGCGACGTGTGGAAGAAGAGGTTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)

AAA domain (AAA_25)

(80-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0C2G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.334

96.146

0.484
  radA Streptococcus pneumoniae Rx1

47.836

94.004

0.45
  radA Streptococcus pneumoniae D39

47.836

94.004

0.45
  radA Streptococcus pneumoniae R6

47.836

94.004

0.45
  radA Streptococcus pneumoniae TIGR4

47.836

94.004

0.45
  radA Streptococcus mitis SK321

48.028

92.291

0.443
  radA Streptococcus mitis NCTC 12261

47.796

92.291

0.441

Multiple sequence alignment