Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHJ37_RS16430 Genome accession   NZ_CP051706
Coordinates   3386690..3387295 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCU-124     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3381690..3392295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ37_RS16410 (HHJ37_16420) aes 3381831..3382790 (+) 960 WP_001524183.1 acetyl esterase -
  HHJ37_RS16415 (HHJ37_16425) hemH 3382787..3383749 (-) 963 WP_001250114.1 ferrochelatase -
  HHJ37_RS16420 (HHJ37_16430) adk 3383881..3384525 (-) 645 WP_001313630.1 adenylate kinase -
  HHJ37_RS16425 (HHJ37_16435) htpG 3384706..3386580 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HHJ37_RS16430 (HHJ37_16440) recR 3386690..3387295 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HHJ37_RS16435 (HHJ37_16445) ybaB 3387295..3387624 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HHJ37_RS16440 (HHJ37_16450) dnaX 3387677..3389608 (-) 1932 WP_001524179.1 DNA polymerase III subunit gamma/tau -
  HHJ37_RS16445 (HHJ37_16455) apt 3389737..3390288 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HHJ37_RS16450 (HHJ37_16460) ybaN 3390441..3390818 (-) 378 WP_001188900.1 DUF454 family protein -
  HHJ37_RS16455 (HHJ37_16465) priC 3390888..3391415 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  HHJ37_RS16460 (HHJ37_16470) rsmS 3391429..3391590 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HHJ37_RS24595 - 3391643..3391741 (-) 99 Protein_3260 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=387005 HHJ37_RS16430 WP_001195025.1 3386690..3387295(-) (recR) [Escherichia coli strain SCU-124]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=387005 HHJ37_RS16430 WP_001195025.1 3386690..3387295(-) (recR) [Escherichia coli strain SCU-124]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment