Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ37_RS08725 Genome accession   NZ_CP051706
Coordinates   1853216..1854643 (-) Length   475 a.a.
NCBI ID   WP_000980557.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-124     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1848216..1859643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ37_RS08690 (HHJ37_08695) hisL 1848800..1848850 (-) 51 WP_001364200.1 his operon leader peptide -
  HHJ37_RS08695 (HHJ37_08700) yefM 1849133..1849384 (+) 252 WP_001259253.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HHJ37_RS08700 (HHJ37_08705) yoeB 1849381..1849635 (+) 255 WP_000767819.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HHJ37_RS08705 (HHJ37_08710) yeeZ 1849718..1850542 (+) 825 WP_000754733.1 SDR family oxidoreductase -
  HHJ37_RS08710 (HHJ37_08715) yeeY 1850588..1851517 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  HHJ37_RS08715 (HHJ37_08720) yoeI 1851732..1851794 (+) 63 WP_010723108.1 membrane protein YoeI -
  HHJ37_RS08720 (HHJ37_08725) plaP 1851784..1853142 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HHJ37_RS08725 (HHJ37_08730) sbcB 1853216..1854643 (-) 1428 WP_000980557.1 exodeoxyribonuclease I Machinery gene
  HHJ37_RS08730 (HHJ37_08735) dacD 1854852..1856018 (+) 1167 WP_001524970.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ37_RS08735 (HHJ37_08740) sbmC 1856137..1856610 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  HHJ37_RS08740 (HHJ37_08745) yeeA 1856808..1857866 (+) 1059 WP_001524969.1 FUSC family protein -
  HHJ37_RS08745 (HHJ37_08750) tmaR 1858038..1858367 (+) 330 WP_000450409.1 DUF496 family protein -
  HHJ37_RS08750 (HHJ37_08755) - 1858467..1858910 (-) 444 WP_001189438.1 EutP/PduV family microcompartment system protein -
  HHJ37_RS08755 (HHJ37_08760) pduU 1858915..1859265 (-) 351 WP_001524968.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54455.73 Da        Isoelectric Point: 5.4700

>NTDB_id=386988 HHJ37_RS08725 WP_000980557.1 1853216..1854643(-) (sbcB) [Escherichia coli strain SCU-124]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=386988 HHJ37_RS08725 WP_000980557.1 1853216..1854643(-) (sbcB) [Escherichia coli strain SCU-124]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment