Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HHJ37_RS05405 Genome accession   NZ_CP051706
Coordinates   1145077..1145592 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain SCU-124     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140077..1150592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ37_RS05365 (HHJ37_05370) csrA 1141072..1141257 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HHJ37_RS05390 (HHJ37_05395) yqaB 1142307..1142873 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HHJ37_RS05395 (HHJ37_05400) yqaA 1142870..1143298 (+) 429 WP_001287462.1 YqaA family protein -
  HHJ37_RS05400 (HHJ37_05405) gshA 1143371..1144927 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HHJ37_RS05405 (HHJ37_05410) luxS 1145077..1145592 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HHJ37_RS05410 (HHJ37_05415) - 1145643..1146755 (-) 1113 WP_001525433.1 ATP-binding protein -
  HHJ37_RS05415 (HHJ37_05420) - 1146752..1147459 (-) 708 WP_001097131.1 RNA ligase family protein -
  HHJ37_RS05420 (HHJ37_05425) emrB 1147717..1149255 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  HHJ37_RS05425 (HHJ37_05430) emrA 1149272..1150444 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=386978 HHJ37_RS05405 WP_001130211.1 1145077..1145592(+) (luxS) [Escherichia coli strain SCU-124]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=386978 HHJ37_RS05405 WP_001130211.1 1145077..1145592(+) (luxS) [Escherichia coli strain SCU-124]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAACTGAACGTCTACCAGTGCGGCACTTACCAGATGC
ACTCATTGCAGGAGGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment