Detailed information NTG0386975

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ37_RS05085
• Genome accession: NZ_CP051706
• Coordinates: 1079555..1080547 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-124
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1074555..1085547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ37_RS05055 (HHJ37_05060)	ispD	1074616..1075326 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HHJ37_RS05060 (HHJ37_05065)	ispF	1075326..1075805 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ37_RS05065 (HHJ37_05070)	truD	1075802..1076851 (+)	1050	WP_000568954.1	tRNA pseudouridine(13) synthase TruD	-
HHJ37_RS05070 (HHJ37_05075)	surE	1076832..1077593 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ37_RS05075 (HHJ37_05080)	pcm	1077587..1078213 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HHJ37_RS05080 (HHJ37_05085)	nlpD	1078398..1079492 (+)	1095	WP_306304869.1	murein hydrolase activator NlpD	-
HHJ37_RS05085 (HHJ37_05090)	rpoS	1079555..1080547 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ37_RS05090 (HHJ37_05095)	-	1080725..1081276 (-)	552	WP_001179444.1	flavodoxin family protein	-
HHJ37_RS05095 (HHJ37_05100)	-	1081501..1082544 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
HHJ37_RS05100 (HHJ37_05105)	ygbN	1082687..1084051 (-)	1365	WP_000104433.1	GntP family transporter	-
HHJ37_RS05105 (HHJ37_05110)	ygbM	1084140..1084916 (-)	777	WP_001525482.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=386975 HHJ37_RS05085 WP_000081550.1 1079555..1080547(+) (rpoS) [Escherichia coli strain SCU-124]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=386975 HHJ37_RS05085 WP_000081550.1 1079555..1080547(+) (rpoS) [Escherichia coli strain SCU-124]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715