Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   HHJ37_RS03865 Genome accession   NZ_CP051706
Coordinates   805716..806960 (-) Length   414 a.a.
NCBI ID   WP_169063407.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-124     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 800716..811960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ37_RS03850 (HHJ37_03850) - 800766..802022 (+) 1257 WP_169063406.1 GDSL-type esterase/lipase family protein -
  HHJ37_RS03855 (HHJ37_03855) neuC 802019..803194 (+) 1176 WP_032144273.1 UDP-N-acetylglucosamine 2-epimerase -
  HHJ37_RS03865 (HHJ37_03865) kpsS 805716..806960 (-) 1245 WP_169063407.1 capsular biosynthesis protein Regulator
  HHJ37_RS03870 (HHJ37_03870) - 806995..809022 (-) 2028 WP_001525617.1 capsular polysaccharide biosynthesis protein -
  HHJ37_RS03875 (HHJ37_03875) kdsB 809019..809759 (-) 741 WP_000030761.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HHJ37_RS03880 (HHJ37_03880) - 809769..811445 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 49404.24 Da        Isoelectric Point: 10.2116

>NTDB_id=386971 HHJ37_RS03865 WP_169063407.1 805716..806960(-) (kpsS) [Escherichia coli strain SCU-124]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYDLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNAVLLWGTQKKNANII
HIKFQVNIFFFNFK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=386971 HHJ37_RS03865 WP_169063407.1 805716..806960(-) (kpsS) [Escherichia coli strain SCU-124]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCTGGTTGGTTGCGAGATCTCCACCGACAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTAGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGACTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACGCAGGTTAATGCGGTTTTATTATGGGGAACACAAAAAAAAAACGCCAACATAATA
CATATTAAATTTCAAGTCAATATTTTTTTTTTTAATTTTAAGTAG

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.896

93.237

0.372