Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HHJ38_RS21745 Genome accession   NZ_CP051700
Coordinates   4453800..4454315 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain SCU-125     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4448800..4459315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ38_RS21700 (HHJ38_21710) csrA 4449678..4449863 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HHJ38_RS21730 (HHJ38_21740) yqaB 4451030..4451596 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HHJ38_RS21735 (HHJ38_21745) yqaA 4451593..4452021 (+) 429 WP_001287452.1 YqaA family protein -
  HHJ38_RS21740 (HHJ38_21750) gshA 4452094..4453650 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  HHJ38_RS21745 (HHJ38_21755) luxS 4453800..4454315 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  HHJ38_RS21750 (HHJ38_21760) emrB 4454379..4455917 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  HHJ38_RS21755 (HHJ38_21765) emrA 4455934..4457106 (-) 1173 WP_169063615.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HHJ38_RS21760 (HHJ38_21770) emrR 4457233..4457763 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HHJ38_RS21770 (HHJ38_21780) ygaH 4457854..4458189 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  HHJ38_RS21775 (HHJ38_21785) ygaZ 4458179..4458916 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=386944 HHJ38_RS21745 WP_001130208.1 4453800..4454315(+) (luxS) [Escherichia coli strain SCU-125]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=386944 HHJ38_RS21745 WP_001130208.1 4453800..4454315(+) (luxS) [Escherichia coli strain SCU-125]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737