Detailed information NTG0386941

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ38_RS21455
• Genome accession: NZ_CP051700
• Coordinates: 4400537..4401529 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-125
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4395537..4406529

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ38_RS21425 (HHJ38_21435)	ispD	4395598..4396308 (+)	711	WP_021524451.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HHJ38_RS21430 (HHJ38_21440)	ispF	4396308..4396787 (+)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ38_RS21435 (HHJ38_21445)	truD	4396784..4397833 (+)	1050	WP_021524450.1	tRNA pseudouridine(13) synthase TruD	-
HHJ38_RS21440 (HHJ38_21450)	surE	4397814..4398575 (+)	762	WP_016247751.1	5'/3'-nucleotidase SurE	-
HHJ38_RS21445 (HHJ38_21455)	pcm	4398569..4399195 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HHJ38_RS21450 (HHJ38_21460)	nlpD	4399380..4400474 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ38_RS21455 (HHJ38_21465)	rpoS	4400537..4401529 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ38_RS21460 (HHJ38_21470)	-	4401707..4402258 (-)	552	WP_001179442.1	flavodoxin family protein	-
HHJ38_RS21465 (HHJ38_21475)	-	4402483..4403526 (+)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
HHJ38_RS21470 (HHJ38_21480)	ygbN	4403669..4405033 (-)	1365	WP_000104433.1	GntP family transporter	-
HHJ38_RS21475 (HHJ38_21485)	ygbM	4405122..4405898 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=386941 HHJ38_RS21455 WP_000081550.1 4400537..4401529(+) (rpoS) [Escherichia coli strain SCU-125]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=386941 HHJ38_RS21455 WP_000081550.1 4400537..4401529(+) (rpoS) [Escherichia coli strain SCU-125]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGCCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715