Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   STAUR_RS09255 Genome accession   NC_014623
Coordinates   2333470..2334831 (-) Length   453 a.a.
NCBI ID   WP_002613827.1    Uniprot ID   Q092E9
Organism   Stigmatella aurantiaca DW4/3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2328470..2339831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAUR_RS09245 (STAUR_1879) - 2328756..2330852 (+) 2097 WP_002613821.1 cation:proton antiporter -
  STAUR_RS09250 (STAUR_1880) - 2330859..2333426 (-) 2568 WP_013374920.1 PAS domain S-box protein -
  STAUR_RS09255 (STAUR_1881) radA 2333470..2334831 (-) 1362 WP_002613827.1 DNA repair protein RadA Machinery gene
  STAUR_RS09260 (STAUR_1882) - 2335050..2335319 (+) 270 WP_013374921.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  STAUR_RS09265 (STAUR_1883) bioB 2335504..2336529 (+) 1026 WP_002613864.1 biotin synthase BioB -
  STAUR_RS09270 (STAUR_1884) bioF 2336553..2337731 (+) 1179 WP_232293405.1 8-amino-7-oxononanoate synthase -
  STAUR_RS09275 (STAUR_1885) bioD 2337724..2338416 (+) 693 WP_013374922.1 dethiobiotin synthase -
  STAUR_RS09280 (STAUR_1886) - 2338522..2338800 (+) 279 WP_002613832.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47873.25 Da        Isoelectric Point: 7.3826

>NTDB_id=38693 STAUR_RS09255 WP_002613827.1 2333470..2334831(-) (radA) [Stigmatella aurantiaca DW4/3-1]
MAKAKTHYSCQACGYQTAKWLGKCPDCGAWSSLLEESEAKPDEKRPAWGASGGSTKPVLLKDVSGEVEARRRTGIAEFDR
VLGGGVVGGSLVLLGGDPGIGKSTLLLAALDRLARHGPVLYVSGEESLRQTKMRAERLRVEGEAIHLFAETDADRVLSAA
EALKPMALVVDSIQTMYLPELGSAPGSITQVREVAGRLMAYAKRTGVPTFIVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRILRAHKNRFGSTNEIGVFEMKGLGLVEVPDPSALFLAERPAGKAGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEDIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLDPHTLVLGEVGLAGEV
RAVGQVEPRLAEASKMGFQRVVLPSGSARRLEAAKLKVVGVETLGEALSAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=38693 STAUR_RS09255 WP_002613827.1 2333470..2334831(-) (radA) [Stigmatella aurantiaca DW4/3-1]
ATGGCGAAGGCAAAGACCCATTACTCCTGTCAGGCGTGCGGGTACCAGACGGCGAAGTGGCTCGGGAAATGTCCTGACTG
TGGAGCATGGAGTTCGCTGCTGGAGGAGTCGGAGGCCAAACCCGACGAGAAGCGCCCCGCCTGGGGCGCCTCGGGCGGGT
CCACCAAGCCCGTCCTCCTCAAGGATGTGAGCGGAGAGGTCGAGGCGCGGCGGCGCACGGGCATCGCCGAGTTCGACCGG
GTCCTCGGAGGGGGCGTGGTGGGAGGCTCGCTGGTGCTGCTGGGGGGAGACCCGGGCATTGGCAAGTCCACCCTGCTGCT
GGCCGCGCTGGATCGGCTGGCCCGCCATGGACCGGTGCTCTACGTGTCGGGCGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCCGAGCGGCTGCGGGTCGAGGGAGAGGCCATCCACCTGTTCGCGGAAACCGACGCGGACCGGGTGCTGAGCGCCGCC
GAGGCCCTCAAACCCATGGCCCTGGTGGTGGACTCCATCCAGACGATGTATCTGCCGGAGTTGGGCAGCGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGGCGGCTGATGGCCTACGCCAAGCGGACCGGGGTCCCCACCTTCATCGTGGGCC
ACGTAACGAAGGAGGGCTCCATCGCCGGCCCCCGCGTGCTGGAGCACATGGTGGACACCGTCCTCTACTTCGAGGGCGAA
CGCGGCCACCCCTTCCGCATCCTCCGGGCCCACAAGAACCGCTTCGGATCCACCAACGAGATCGGTGTCTTCGAGATGAA
GGGGCTGGGGCTCGTGGAGGTGCCAGACCCGTCCGCCCTCTTCCTCGCGGAGCGGCCCGCGGGCAAGGCGGGCAGCGTGG
TGACCTCCACGCTCAACGGCACCCGGCCCCTGCTGGTGGAGGTGCAAGCGCTGGTGGCGCCCACGGGCTACGGCACGGCC
CGCCGCACGGCCATCGGCGTGGATGGCAACCGCGTGGCACTGCTGGCCGCGGTGCTGGAAAAGAAGGAAGACATTCCCCT
CGTGGGGTGCGATCTGTTCGTCAACGTGGCGGGAGGCATGCAGTTGTCCGAGCCCGCGTGTGATCTGGCCGTCTGCGCGG
CGCTGGTGTCCAGCCTCCAGAACAGGCCCTTGGACCCCCATACATTGGTGCTGGGCGAGGTGGGCCTCGCCGGCGAGGTG
CGCGCCGTGGGGCAGGTAGAGCCCCGGCTGGCCGAGGCGTCGAAGATGGGCTTCCAGCGCGTGGTGCTGCCCTCCGGCAG
CGCCCGGCGGCTGGAGGCGGCGAAGCTCAAAGTGGTAGGAGTGGAGACACTCGGCGAGGCGCTGAGCGCCATGTTCGACT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(79-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q092E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.761

99.779

0.536
  radA Streptococcus pneumoniae Rx1

52.539

100

0.525
  radA Streptococcus pneumoniae D39

52.539

100

0.525
  radA Streptococcus pneumoniae R6

52.539

100

0.525
  radA Streptococcus pneumoniae TIGR4

52.539

100

0.525
  radA Streptococcus mitis NCTC 12261

52.539

100

0.525
  radA Streptococcus mitis SK321

52.318

100

0.523

Multiple sequence alignment