Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   NMAA_RS07105 Genome accession   NC_017512
Coordinates   1350327..1351373 (-) Length   348 a.a.
NCBI ID   WP_002246270.1    Uniprot ID   P56987
Organism   Neisseria meningitidis WUE 2594     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1345327..1356373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMAA_RS07090 (NMAA_1155) dnaX 1346514..1348643 (+) 2130 WP_002246268.1 DNA polymerase III subunit gamma/tau -
  NMAA_RS07095 (NMAA_1156) - 1348723..1349058 (+) 336 WP_002219073.1 YbaB/EbfC family nucleoid-associated protein -
  NMAA_RS07105 (NMAA_1157) recA 1350327..1351373 (-) 1047 WP_002246270.1 recombinase RecA Machinery gene
  NMAA_RS07110 (NMAA_1158) aroD 1351627..1352391 (+) 765 WP_002219072.1 type I 3-dehydroquinate dehydratase -
  NMAA_RS07115 (NMAA_1159) rep 1352411..1354426 (+) 2016 WP_002246271.1 DNA helicase Rep -
  NMAA_RS07120 (NMAA_1160) dinB 1354494..1355552 (-) 1059 WP_002246272.1 DNA polymerase IV -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 37612.84 Da        Isoelectric Point: 4.8330

>NTDB_id=38693 NMAA_RS07105 WP_002246270.1 1350327..1351373(-) (recA) [Neisseria meningitidis WUE 2594]
MSDDKSKALAAALAQIEKSFGKGAIMKMDGSQQEENLEVISTGSLGLDLALGVGGLPRGRIVEIFGPESSGKTTLCLEAV
AQCQKNGGVCAFVDAEHAFDPVYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGDMG
DSHVGLQARLMSQALRKLTGHIKKTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSIKKGEEVLGN
ETRVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDIGVKNDIINKSGAWYSYNGAKIGQGKDNVRVWLKENPEVADEID
AKIRALNGVEMHITEGTQDETDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=38693 NMAA_RS07105 WP_002246270.1 1350327..1351373(-) (recA) [Neisseria meningitidis WUE 2594]
ATGTCAGACGACAAAAGCAAAGCCCTTGCCGCCGCACTGGCGCAAATCGAAAAAAGTTTCGGCAAAGGCGCCATCATGAA
AATGGACGGCAGCCAGCAGGAAGAAAACCTCGAAGTCATTTCCACCGGATCGCTCGGATTAGACCTCGCCCTCGGAGTCG
GCGGTCTGCCGCGCGGGCGCATCGTCGAAATCTTCGGCCCCGAATCCTCCGGCAAAACCACCCTCTGCCTCGAAGCCGTC
GCCCAATGCCAGAAAAACGGCGGCGTGTGCGCCTTTGTCGATGCCGAACACGCCTTTGATCCCGTTTACGCCCGCAAACT
CGGCGTAAAAGTCGAAGAGCTTTACCTGTCCCAGCCCGATACCGGCGAACAGGCTTTGGAAATCTGCGACACACTCGTCC
GTTCGGGCGGCATAGATATGGTAGTCGTCGATTCCGTAGCCGCACTCGTCCCCAAAGCCGAAATCGAAGGCGATATGGGG
GACAGCCATGTCGGACTGCAGGCGCGCCTGATGAGCCAGGCTTTGCGCAAACTGACCGGACACATCAAAAAAACCAACAC
GCTGGTTGTGTTCATCAACCAAATCCGGATGAAGATCGGCGTAATGTTCGGCAGCCCCGAAACCACCACCGGCGGCAACG
CGCTGAAATTCTATTCTTCCGTCCGCCTCGACATCCGCCGCACCGGATCCATCAAAAAAGGCGAAGAGGTATTGGGCAAC
GAAACCCGCGTCAAAGTCATCAAAAACAAAGTCGCCCCCCCGTTCCGTCAGGCAGAGTTTGACATCCTCTACGGAGAAGG
CATCAGTTGGGAAGGCGAATTGATCGACATCGGCGTGAAAAACGACATCATCAACAAATCCGGCGCGTGGTACAGCTACA
ACGGTGCGAAAATCGGGCAGGGCAAGGACAACGTCCGTGTCTGGTTGAAGGAGAATCCTGAGGTTGCCGATGAGATCGAT
GCGAAAATCCGCGCCCTCAACGGCGTAGAAATGCACATCACCGAAGGGACACAGGACGAAACCGACGGCGAACGCCCCGA
AGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P56987

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

99.425

100

0.994

  recA Neisseria gonorrhoeae MS11

99.425

100

0.994

  recA Ralstonia pseudosolanacearum GMI1000

74.772

94.54

0.707

  recA Vibrio cholerae strain A1552

66.949

100

0.681

  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.949

100

0.681

  recA Glaesserella parasuis strain SC1401

67.521

100

0.681

  recA Pseudomonas stutzeri DSM 10701

71.385

93.391

0.667

  recA Acinetobacter nosocomialis M2

65.812

100

0.664

  recA Acinetobacter baylyi ADP1

66.282

99.713

0.661

  recA Acinetobacter baumannii D1279779

65.517

100

0.655

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.103

97.989

0.638

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.378

94.253

0.635

  recA Staphylococcus aureus strain ATCC 12600

64.897

97.414

0.632

  recA Helicobacter pylori 26695

67.385

93.391

0.629

  recA Helicobacter pylori strain NCTC11637

67.077

93.391

0.626

  recA Bacillus subtilis subsp. subtilis str. 168

64.832

93.966

0.609

  recA Streptococcus mutans UA159

60.399

100

0.609

  recA Streptococcus pneumoniae R36A

59.259

100

0.598

  recA Streptococcus pneumoniae Rx1

59.259

100

0.598

  recA Streptococcus pneumoniae D39

59.259

100

0.598

  recA Streptococcus pneumoniae R6

59.259

100

0.598

  recA Streptococcus pneumoniae TIGR4

59.259

100

0.598

  recA Streptococcus thermophilus LMD-9

59.538

99.425

0.592

  recA Streptococcus thermophilus LMG 18311

59.538

99.425

0.592

  recA Latilactobacillus sakei subsp. sakei 23K

62.997

93.966

0.592

  recA Streptococcus mitis NCTC 12261

59.593

98.851

0.589

  recA Streptococcus pyogenes NZ131

61.963

93.678

0.58

  recA Streptococcus mitis SK321

60.909

94.828

0.578

  recA Lactococcus lactis subsp. cremoris KW2

60.606

94.828

0.575

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.819

95.115

0.569


Multiple sequence alignment