Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   F3L01_RS19820 Genome accession   NZ_CP043966
Coordinates   3947587..3947865 (-) Length   92 a.a.
NCBI ID   WP_002066820.1    Uniprot ID   C2XY81
Organism   Bacillus cereus strain H2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3942587..3952865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3L01_RS19780 (F3L01_20120) - 3943096..3943683 (-) 588 WP_061685163.1 HNH endonuclease signature motif containing protein -
  F3L01_RS19785 (F3L01_20125) - 3943686..3943916 (-) 231 WP_061685162.1 hypothetical protein -
  F3L01_RS19790 (F3L01_20135) - 3944608..3945012 (-) 405 WP_000389429.1 YopX family protein -
  F3L01_RS19795 (F3L01_20140) - 3945536..3946012 (-) 477 WP_061685161.1 hypothetical protein -
  F3L01_RS19800 (F3L01_20145) - 3946016..3946531 (-) 516 WP_061685160.1 dUTP diphosphatase -
  F3L01_RS19805 (F3L01_20150) - 3946552..3947025 (-) 474 WP_061685159.1 hypothetical protein -
  F3L01_RS19810 (F3L01_20155) - 3947051..3947215 (-) 165 WP_002066822.1 DUF3954 domain-containing protein -
  F3L01_RS19815 (F3L01_20160) - 3947235..3947594 (-) 360 WP_033698079.1 hypothetical protein -
  F3L01_RS19820 (F3L01_20165) abrB 3947587..3947865 (-) 279 WP_002066820.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  F3L01_RS19825 (F3L01_20170) - 3947879..3948361 (-) 483 WP_061685158.1 YpiB family protein -
  F3L01_RS19830 (F3L01_20175) - 3948365..3949435 (-) 1071 WP_061685157.1 DnaD domain protein -
  F3L01_RS19835 - 3949503..3949658 (-) 156 WP_080450635.1 hypothetical protein -
  F3L01_RS19840 (F3L01_20180) - 3949715..3949915 (-) 201 WP_061685156.1 helix-turn-helix domain-containing protein -
  F3L01_RS19845 (F3L01_20185) - 3949973..3950194 (-) 222 WP_061685155.1 helix-turn-helix transcriptional regulator -
  F3L01_RS19850 (F3L01_20190) - 3950415..3950783 (+) 369 WP_061685154.1 helix-turn-helix transcriptional regulator -
  F3L01_RS29240 - 3950806..3950928 (-) 123 WP_256874234.1 hypothetical protein -
  F3L01_RS19855 - 3951048..3951197 (-) 150 WP_080450633.1 hypothetical protein -
  F3L01_RS19860 (F3L01_20195) - 3951210..3952307 (-) 1098 WP_178927586.1 AimR family lysis-lysogeny pheromone receptor -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10173.82 Da        Isoelectric Point: 6.9817

>NTDB_id=386891 F3L01_RS19820 WP_002066820.1 3947587..3947865(-) (abrB) [Bacillus cereus strain H2]
MKNTGIVRKVDELGRVVIPVELRRTLGIAEGTALDFHVYGENIILKKQEKSCFVTGEVSESNIELLGGRMFLSKKAASEL
LDLLQKNVTENA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=386891 F3L01_RS19820 WP_002066820.1 3947587..3947865(-) (abrB) [Bacillus cereus strain H2]
ATGAAAAACACAGGTATTGTAAGAAAAGTCGATGAGTTAGGTCGTGTAGTAATTCCAGTAGAGTTACGCAGAACTTTGGG
TATTGCTGAAGGTACTGCACTAGACTTTCATGTTTATGGAGAAAATATCATTTTGAAAAAACAAGAAAAGTCATGCTTTG
TAACGGGAGAGGTGTCTGAATCTAACATTGAATTGTTAGGTGGGCGAATGTTTTTGAGTAAGAAAGCTGCAAGTGAGTTA
CTGGATCTTCTTCAAAAGAATGTGACGGAAAATGCCTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)

AbrB C-terminal domain (AbrB_C)

(52-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C2XY81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

60.92

94.565

0.576

Multiple sequence alignment