Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHJ38_RS09155 Genome accession   NZ_CP051700
Coordinates   1804256..1804861 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCU-125     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1799256..1809861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ38_RS09135 (HHJ38_09140) aes 1799410..1800378 (+) 969 WP_000801820.1 acetyl esterase -
  HHJ38_RS09140 (HHJ38_09145) hemH 1800353..1801315 (-) 963 WP_001250114.1 ferrochelatase -
  HHJ38_RS09145 (HHJ38_09150) adk 1801447..1802091 (-) 645 WP_021523796.1 adenylate kinase -
  HHJ38_RS09150 (HHJ38_09155) htpG 1802272..1804146 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HHJ38_RS09155 (HHJ38_09160) recR 1804256..1804861 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HHJ38_RS09160 (HHJ38_09165) ybaB 1804861..1805190 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HHJ38_RS09165 (HHJ38_09170) dnaX 1805243..1807174 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  HHJ38_RS09170 (HHJ38_09175) apt 1807303..1807854 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HHJ38_RS09175 (HHJ38_09180) ybaN 1808007..1808384 (-) 378 WP_001188905.1 DUF454 family protein -
  HHJ38_RS09180 (HHJ38_09185) priC 1808454..1808981 (+) 528 WP_000844868.1 primosomal replication protein N'' -
  HHJ38_RS09185 (HHJ38_09190) rsmS 1808995..1809156 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HHJ38_RS26505 - 1809209..1809307 (-) 99 Protein_1812 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=386884 HHJ38_RS09155 WP_001195025.1 1804256..1804861(-) (recR) [Escherichia coli strain SCU-125]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=386884 HHJ38_RS09155 WP_001195025.1 1804256..1804861(-) (recR) [Escherichia coli strain SCU-125]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment