Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ38_RS00685 Genome accession   NZ_CP051700
Coordinates   154717..156144 (-) Length   475 a.a.
NCBI ID   WP_021524295.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-125     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 149717..161144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ38_RS00650 (HHJ38_00650) hisL 150301..150351 (-) 51 WP_001364200.1 his operon leader peptide -
  HHJ38_RS00655 (HHJ38_00655) yefM 150634..150885 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HHJ38_RS00660 (HHJ38_00660) yoeB 150882..151136 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HHJ38_RS00665 (HHJ38_00665) yeeZ 151219..152043 (+) 825 WP_021524296.1 SDR family oxidoreductase -
  HHJ38_RS00670 (HHJ38_00670) yeeY 152089..153018 (+) 930 WP_000803346.1 LysR substrate-binding domain-containing protein -
  HHJ38_RS00675 (HHJ38_00675) yoeI 153233..153295 (+) 63 WP_010723108.1 membrane protein YoeI -
  HHJ38_RS00680 (HHJ38_00680) plaP 153285..154643 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HHJ38_RS00685 (HHJ38_00685) sbcB 154717..156144 (-) 1428 WP_021524295.1 exodeoxyribonuclease I Machinery gene
  HHJ38_RS00690 (HHJ38_00690) dacD 156353..157519 (+) 1167 WP_100272967.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ38_RS00695 (HHJ38_00695) sbmC 157638..158111 (+) 474 WP_021524294.1 DNA gyrase inhibitor SbmC -
  HHJ38_RS00700 (HHJ38_00700) yeeA 158309..159367 (+) 1059 WP_001200890.1 FUSC family protein -
  HHJ38_RS00705 (HHJ38_00705) tmaR 159539..159868 (+) 330 WP_000450409.1 DUF496 family protein -
  HHJ38_RS00710 (HHJ38_00710) - 159968..160411 (-) 444 WP_001189443.1 EutP/PduV family microcompartment system protein -
  HHJ38_RS00715 (HHJ38_00715) pduU 160416..160766 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.75 Da        Isoelectric Point: 5.4700

>NTDB_id=386867 HHJ38_RS00685 WP_021524295.1 154717..156144(-) (sbcB) [Escherichia coli strain SCU-125]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLQALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=386867 HHJ38_RS00685 WP_021524295.1 154717..156144(-) (sbcB) [Escherichia coli strain SCU-125]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACAGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment