Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PPSC2_RS51290 Genome accession   NC_014622
Coordinates   5050811..5052184 (-) Length   457 a.a.
NCBI ID   WP_013373291.1    Uniprot ID   -
Organism   Paenibacillus polymyxa SC2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5045811..5057184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPSC2_RS51265 (PPSC2_22550) ispF 5046403..5046879 (-) 477 WP_013373286.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  PPSC2_RS51270 (PPSC2_22555) ispD 5046876..5047574 (-) 699 WP_013373287.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  PPSC2_RS51275 (PPSC2_22560) - 5047645..5048730 (-) 1086 WP_013373288.1 PIN/TRAM domain-containing protein -
  PPSC2_RS51280 (PPSC2_22565) pssA 5048921..5049667 (-) 747 WP_013373289.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  PPSC2_RS51285 (PPSC2_22570) disA 5049722..5050798 (-) 1077 WP_013373290.1 DNA integrity scanning diadenylate cyclase DisA -
  PPSC2_RS51290 (PPSC2_22575) radA 5050811..5052184 (-) 1374 WP_013373291.1 DNA repair protein RadA Machinery gene
  PPSC2_RS51295 (PPSC2_22580) clpC 5052426..5054870 (-) 2445 WP_013373292.1 ATP-dependent protease ATP-binding subunit ClpC -
  PPSC2_RS51300 (PPSC2_22585) - 5054915..5055979 (-) 1065 WP_013373293.1 protein arginine kinase -
  PPSC2_RS51305 (PPSC2_22590) - 5056009..5056533 (-) 525 WP_013373294.1 UvrB/UvrC motif-containing protein -
  PPSC2_RS51310 (PPSC2_22595) - 5056618..5057082 (-) 465 WP_013373295.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49242.94 Da        Isoelectric Point: 6.7620

>NTDB_id=38684 PPSC2_RS51290 WP_013373291.1 5050811..5052184(-) (radA) [Paenibacillus polymyxa SC2]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVANPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGIDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=38684 PPSC2_RS51290 WP_013373291.1 5050811..5052184(-) (radA) [Paenibacillus polymyxa SC2]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAATGTGGCTATGAATCGCCTAAATGGTACGGAAAATGCCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGATCTTCCCTTCTTACTCATA
GCACAAAAGACAAACCGCTTCCTATTATTGAAGTGGAAAGTGGCAAAGAAACACGAATTTTAACGGGAATTGGTGAATTA
AATCGTGTACTTGGTGGAGGTGTGGTGCCAGGTTCACTTGTTCTGGTGGGTGGTGATCCGGGGATCGGCAAGTCTACGCT
TATGCTGCAAACCTCTAATGAGCTGGCTTTAACTGGTTTAAAGGTACTGTACGTGTCTGGTGAGGAATCCGTCCGCCAAA
CAAAGCTACGTGCAGATCGTCTCGGTGCCTTGTCTCCCAGTCTGTACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCAGTAGACAGCTTGAAGCCAGAGTTTTTGGTCATCGACTCGATACAGACTGTATATTTGCCTGAGGTGACAAGTGC
GCCTGGTAGTGTAGCTCAGGTGCGCGAGTGTACTTCACGATTTATGCGGATTGCCAAGGGATTAGGTATTGCTACAGTAC
TGGTAGGGCATGTGACCAAGGAAGGCGCTATTGCAGGTCCGCGTTTGTTGGAGCATATGGTCGATTGTGTACTTTATTTT
GAAGGAGAGCGTCATCATACGTATCGGCTGTTGCGTGCGGTTAAGAATCGCTTTGGTTCTACGAATGAAATTGGTATTTT
TGAAATGGCCGAAAGTGGTTTGCGTGAGGTGGCGAATCCTTCTGAACTTTTCTTGTCCGAACGGCCACTGGGGGTGGCAG
GTTCCACCGTCGTTGCCAGTATGGAGGGAACCCGACCTGTATTGGTTGAACTGCAAGCACTAATTGCAGCTACACATTTT
CCATCTCCACGCCGAATGGGTACGGGGATCGACCATCATCGGATGGGATTAATCATTGCCGTCCTAGAAAAGCGGATGGG
CATGTTCTTGCAAAACCAGGACGCTTATCTCAACGTTGCTGGAGGCGTGAAGCTGGATGAACCAGCGGTGGATTTAGCTA
TAGCGGTGAGCATTGCTTCCAGCTTTAGGGATGCTCCTACCAAGCCGTACGATGTGATTTTTGGTGAAGTAGGACTGACA
GGCGAGGTGCGGGCTGTATCCCGAGCAGAACAGCGAGTGCGAGAAGCGGAGAAATTAGGTTTCAAACGGGTAATCATGCC
CGAGAAAAGCTTAAAGGGCTGGACACATCCGAAAGGGATACAAATTATAGGAGTTGGAACGGTGGCAGATGCACTGGCAG
CTGCATTAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(350-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.249

100

0.674
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58

Multiple sequence alignment