Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHJ40_RS16785 Genome accession   NZ_CP051698
Coordinates   3500075..3500680 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain SCU-152     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3495075..3505680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ40_RS16765 (HHJ40_16770) aes 3495112..3496071 (+) 960 WP_169059596.1 acetyl esterase -
  HHJ40_RS16770 (HHJ40_16775) hemH 3496068..3497030 (-) 963 WP_001250088.1 ferrochelatase -
  HHJ40_RS16775 (HHJ40_16780) adk 3497266..3497910 (-) 645 WP_001220233.1 adenylate kinase -
  HHJ40_RS16780 (HHJ40_16785) htpG 3498091..3499965 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  HHJ40_RS16785 (HHJ40_16790) recR 3500075..3500680 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HHJ40_RS16790 (HHJ40_16795) ybaB 3500680..3501009 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HHJ40_RS16795 (HHJ40_16800) dnaX 3501062..3502993 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  HHJ40_RS16800 (HHJ40_16805) apt 3503122..3503673 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HHJ40_RS16805 (HHJ40_16810) ybaN 3503826..3504203 (-) 378 WP_001188905.1 DUF454 family protein -
  HHJ40_RS16810 (HHJ40_16815) priC 3504273..3504800 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  HHJ40_RS16815 (HHJ40_16820) rsmS 3504814..3504975 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=386839 HHJ40_RS16785 WP_001195025.1 3500075..3500680(-) (recR) [Escherichia coli strain SCU-152]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=386839 HHJ40_RS16785 WP_001195025.1 3500075..3500680(-) (recR) [Escherichia coli strain SCU-152]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment