Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ40_RS08980 Genome accession   NZ_CP051698
Coordinates   1898373..1899800 (-) Length   475 a.a.
NCBI ID   WP_087906083.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-152     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1893373..1904800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ40_RS08950 (HHJ40_08955) yeeZ 1893428..1894252 (+) 825 WP_000754762.1 SDR family oxidoreductase -
  HHJ40_RS08955 (HHJ40_08960) yeeY 1894298..1895227 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  HHJ40_RS08960 (HHJ40_08965) yoeI 1895442..1895504 (+) 63 WP_010723108.1 membrane protein YoeI -
  HHJ40_RS08965 (HHJ40_08970) plaP 1895494..1896852 (+) 1359 WP_169059555.1 putrescine/proton symporter PlaP -
  HHJ40_RS08970 (HHJ40_08975) tsuA 1897031..1898089 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  HHJ40_RS08975 (HHJ40_08980) tsuB 1898103..1898330 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HHJ40_RS08980 (HHJ40_08985) sbcB 1898373..1899800 (-) 1428 WP_087906083.1 exodeoxyribonuclease I Machinery gene
  HHJ40_RS08985 (HHJ40_08990) dacD 1900009..1901175 (+) 1167 WP_087906084.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ40_RS08990 (HHJ40_08995) sbmC 1901294..1901767 (+) 474 WP_001105380.1 DNA gyrase inhibitor SbmC -
  HHJ40_RS08995 (HHJ40_09000) yeeA 1901966..1903024 (+) 1059 WP_001200891.1 FUSC family protein -
  HHJ40_RS09000 (HHJ40_09005) tmaR 1903196..1903525 (+) 330 WP_000450409.1 DUF496 family protein -
  HHJ40_RS09005 (HHJ40_09010) - 1903626..1903817 (-) 192 Protein_1782 EutP/PduV family microcompartment system protein -
  HHJ40_RS09010 (HHJ40_09015) cobU 1903984..1904529 (+) 546 WP_087906085.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54473.79 Da        Isoelectric Point: 5.6070

>NTDB_id=386820 HHJ40_RS08980 WP_087906083.1 1898373..1899800(-) (sbcB) [Escherichia coli strain SCU-152]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=386820 HHJ40_RS08980 WP_087906083.1 1898373..1899800(-) (sbcB) [Escherichia coli strain SCU-152]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCTATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579