Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ46_RS09235 Genome accession   NZ_CP051694
Coordinates   1964933..1966360 (-) Length   475 a.a.
NCBI ID   WP_000980556.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-313     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1959933..1971360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ46_RS09205 (HHJ46_09195) yeeZ 1959947..1960771 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HHJ46_RS09210 (HHJ46_09200) yeeY 1960817..1961746 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  HHJ46_RS09215 (HHJ46_09205) yoeI 1961961..1962023 (+) 63 WP_010723108.1 membrane protein YoeI -
  HHJ46_RS09220 (HHJ46_09210) plaP 1962013..1963371 (+) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  HHJ46_RS09225 (HHJ46_09215) - 1963555..1964252 (+) 698 WP_151884388.1 IS1 family transposase -
  HHJ46_RS09230 (HHJ46_09220) tnpA 1964364..1964822 (+) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  HHJ46_RS09235 (HHJ46_09225) sbcB 1964933..1966360 (-) 1428 WP_000980556.1 exodeoxyribonuclease I Machinery gene
  HHJ46_RS09240 (HHJ46_09230) dacD 1966569..1967735 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ46_RS09245 (HHJ46_09235) sbmC 1967854..1968327 (+) 474 WP_001105368.1 DNA gyrase inhibitor SbmC -
  HHJ46_RS09250 (HHJ46_09240) yeeA 1968525..1969583 (+) 1059 WP_001200889.1 FUSC family protein -
  HHJ46_RS09255 (HHJ46_09245) tmaR 1969755..1970084 (+) 330 WP_000450409.1 DUF496 family protein -
  HHJ46_RS09260 (HHJ46_09250) - 1970185..1970367 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  HHJ46_RS09265 (HHJ46_09255) - 1970421..1970567 (+) 147 Protein_1836 transposase domain-containing protein -
  HHJ46_RS09270 (HHJ46_09260) - 1970856..1970936 (-) 81 Protein_1837 hypothetical protein -
  HHJ46_RS09275 (HHJ46_09265) yeeW 1970982..1971176 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54437.70 Da        Isoelectric Point: 5.4700

>NTDB_id=386740 HHJ46_RS09235 WP_000980556.1 1964933..1966360(-) (sbcB) [Escherichia coli strain SCU-313]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVILVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=386740 HHJ46_RS09235 WP_000980556.1 1964933..1966360(-) (sbcB) [Escherichia coli strain SCU-313]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTAGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTTTGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583