Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HHJ46_RS05950 Genome accession   NZ_CP051694
Coordinates   1231381..1231896 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain SCU-313     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1226381..1236896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ46_RS05905 (HHJ46_05895) csrA 1226834..1227019 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  HHJ46_RS05935 (HHJ46_05925) yqaB 1228611..1229177 (+) 567 WP_000273303.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HHJ46_RS05940 (HHJ46_05930) yqaA 1229174..1229602 (+) 429 WP_001287454.1 YqaA family protein -
  HHJ46_RS05945 (HHJ46_05935) gshA 1229675..1231231 (+) 1557 WP_000611791.1 glutamate--cysteine ligase -
  HHJ46_RS05950 (HHJ46_05940) luxS 1231381..1231896 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HHJ46_RS05955 (HHJ46_05945) emrB 1231960..1233498 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  HHJ46_RS05960 (HHJ46_05950) emrA 1233515..1234687 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HHJ46_RS05965 (HHJ46_05955) emrR 1234814..1235344 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HHJ46_RS05975 (HHJ46_05965) ygaH 1235435..1235770 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  HHJ46_RS05980 (HHJ46_05970) ygaZ 1235760..1236497 (-) 738 WP_000445659.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=386730 HHJ46_RS05950 WP_001130211.1 1231381..1231896(+) (luxS) [Escherichia coli strain SCU-313]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=386730 HHJ46_RS05950 WP_001130211.1 1231381..1231896(+) (luxS) [Escherichia coli strain SCU-313]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731