Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F0161_RS09365 Genome accession   NZ_CP043939
Coordinates   1816155..1817525 (-) Length   456 a.a.
NCBI ID   WP_137601368.1    Uniprot ID   A0A5P1X568
Organism   Paucilactobacillus nenjiangensis strain SH-Y15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1811155..1822525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0161_RS09350 (F0161_09350) - 1811700..1813376 (+) 1677 WP_051552863.1 IS1182 family transposase -
  F0161_RS09355 (F0161_09355) gltX 1813406..1814893 (-) 1488 WP_150204399.1 glutamate--tRNA ligase -
  F0161_RS09360 (F0161_09360) - 1814995..1816128 (-) 1134 WP_150204400.1 PIN/TRAM domain-containing protein -
  F0161_RS09365 (F0161_09365) radA 1816155..1817525 (-) 1371 WP_137601368.1 DNA repair protein RadA Machinery gene
  F0161_RS09370 (F0161_09370) - 1817548..1818084 (-) 537 WP_137601369.1 dUTP diphosphatase -
  F0161_RS09375 (F0161_09375) - 1818224..1818508 (+) 285 WP_150204401.1 N-acetyltransferase -
  F0161_RS09380 (F0161_09380) - 1818573..1819904 (+) 1332 WP_150204402.1 aminopeptidase C -
  F0161_RS09385 (F0161_09385) - 1819975..1820646 (-) 672 WP_150204403.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  F0161_RS11855 (F0161_09390) - 1820816..1821454 (-) 639 WP_225423113.1 LysM domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49787.15 Da        Isoelectric Point: 6.9605

>NTDB_id=386692 F0161_RS09365 WP_137601368.1 1816155..1817525(-) (radA) [Paucilactobacillus nenjiangensis strain SH-Y15]
MAKAKTVYVCSNCGYSSPRFLGRCPNCGEWNTLVEEKVQPESAQSRSRITIDGNKTKPTRISDIHSEDTPRVQTKMPELN
RVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLNQTGGTVLYVSGEESANQIKMRAERLDVTGDQFYIYPETDMASIRA
TIETMKPDYVIIDSVQTMMEPDVTSAIGSVAQIREVTAELMQIGKSNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHAYRILRSVKNRFGSTNELGIFEMQNGGLYEVSNPSEMFLEERLKDATGSAIVVSMEGTRPILVEIQALVTPTVFG
NAQRTASDLNRNRVSLLMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAISMSIASSYRDKGTRPTDAFVGEVGLTG
EIRRVNRIEERVAEARKLGFKRIFVPKNNLQGWTPPKGIQVIGVATLVESLKLALD

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=386692 F0161_RS09365 WP_137601368.1 1816155..1817525(-) (radA) [Paucilactobacillus nenjiangensis strain SH-Y15]
ATGGCTAAAGCAAAAACAGTCTATGTATGTTCAAATTGTGGATATAGTTCTCCCAGATTTTTAGGGCGGTGTCCTAATTG
TGGTGAATGGAACACGTTAGTGGAAGAAAAGGTGCAACCAGAATCGGCCCAAAGCCGCTCCCGAATTACCATTGATGGAA
ATAAAACTAAACCAACACGGATTAGTGACATTCATTCAGAAGATACACCACGAGTACAGACTAAAATGCCGGAACTAAAT
CGCGTCTTGGGTGGCGGAATTGTCCCTGGTTCTTTGATTTTGATTGGTGGAGATCCTGGAATTGGGAAATCAACGCTCCT
CTTACAAGTATCAGGACAATTAAACCAAACGGGTGGCACAGTGCTGTATGTTTCTGGTGAAGAAAGTGCCAACCAAATTA
AAATGCGTGCGGAACGTTTAGACGTAACCGGAGATCAATTTTACATTTATCCGGAAACTGATATGGCTAGTATCCGCGCC
ACCATTGAAACAATGAAACCAGATTATGTCATTATTGATTCTGTCCAGACAATGATGGAACCAGATGTAACTTCGGCGAT
TGGGAGTGTGGCCCAAATTCGCGAAGTCACCGCAGAACTGATGCAAATTGGTAAAAGCAATAATATTACGATCTTTATCG
TTGGCCATGTGACCAAAGGTGGCGCCATTGCGGGGCCTAAAATTTTGGAACATATGGTTGATACAGTGCTTTATTTTGAG
GGCGATTTACACCATGCCTATCGAATTTTACGCTCGGTCAAGAATCGCTTTGGTTCCACAAATGAATTAGGCATTTTTGA
AATGCAAAATGGTGGATTGTACGAAGTGTCAAATCCATCTGAGATGTTTTTGGAAGAACGGCTGAAGGATGCAACTGGCT
CAGCCATCGTGGTTTCTATGGAAGGAACGCGTCCAATTTTAGTAGAAATTCAGGCGCTAGTTACACCGACTGTCTTTGGC
AATGCCCAACGGACAGCGAGTGACTTAAATCGAAACCGAGTTTCCCTTTTAATGGCAGTGCTTGAGAAACGGGCGAATTT
GATGCTTCAAAATCAGGATGCCTATTTAAAAGCGGCTGGTGGTGTCAAATTAGATGAACCAGCGATAGATTTGGCTATTT
CGATGAGTATTGCCTCAAGTTACCGAGACAAAGGAACACGGCCTACAGATGCATTCGTCGGTGAAGTCGGTTTAACTGGT
GAAATTCGCCGTGTTAATCGCATTGAAGAACGGGTGGCAGAAGCCCGTAAATTAGGCTTTAAACGGATTTTTGTCCCTAA
GAATAATTTACAAGGTTGGACCCCACCAAAGGGAATCCAAGTGATTGGTGTAGCTACACTTGTCGAATCACTTAAACTTG
CGTTAGACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1X568

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

67.699

99.123

0.671
  radA Streptococcus mitis SK321

67.699

99.123

0.671
  radA Streptococcus pneumoniae Rx1

67.699

99.123

0.671
  radA Streptococcus pneumoniae D39

67.699

99.123

0.671
  radA Streptococcus pneumoniae R6

67.699

99.123

0.671
  radA Streptococcus pneumoniae TIGR4

67.699

99.123

0.671
  radA Bacillus subtilis subsp. subtilis str. 168

62.281

100

0.623

Multiple sequence alignment