Detailed information NTG0386669

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HHJ48_RS18870
• Genome accession: NZ_CP051688
• Coordinates: 3872351..3873343 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain SCU-387
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3867351..3878343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ48_RS18850 (HHJ48_18855)	ygbM	3867982..3868758 (+)	777	WP_001539449.1	HPr family phosphocarrier protein	-
HHJ48_RS18855 (HHJ48_18860)	ygbN	3868847..3870211 (+)	1365	WP_000104433.1	GntP family transporter	-
HHJ48_RS18860 (HHJ48_18865)	-	3870354..3871397 (-)	1044	WP_001609261.1	MBL fold metallo-hydrolase	-
HHJ48_RS18865 (HHJ48_18870)	-	3871622..3872173 (+)	552	WP_001179442.1	flavodoxin family protein	-
HHJ48_RS18870 (HHJ48_18875)	rpoS	3872351..3873343 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HHJ48_RS18875 (HHJ48_18880)	nlpD	3873406..3874500 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HHJ48_RS18880 (HHJ48_18885)	pcm	3874685..3875311 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
HHJ48_RS18885 (HHJ48_18890)	surE	3875305..3876066 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HHJ48_RS18890 (HHJ48_18895)	truD	3876047..3877096 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
HHJ48_RS18895 (HHJ48_18900)	ispF	3877093..3877572 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HHJ48_RS18900 (HHJ48_18905)	ispD	3877572..3878282 (-)	711	WP_001539454.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=386669 HHJ48_RS18870 WP_000081550.1 3872351..3873343(-) (rpoS) [Escherichia coli strain SCU-387]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=386669 HHJ48_RS18870 WP_000081550.1 3872351..3873343(-) (rpoS) [Escherichia coli strain SCU-387]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715