Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ48_RS15290 Genome accession   NZ_CP051688
Coordinates   3108457..3109884 (+) Length   475 a.a.
NCBI ID   WP_072258000.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-387     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3103457..3114884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ48_RS15250 (HHJ48_15255) yeeW 3103642..3103836 (+) 195 WP_000988601.1 DUF5983 family protein -
  HHJ48_RS15255 (HHJ48_15260) - 3103882..3103962 (+) 81 Protein_3033 hypothetical protein -
  HHJ48_RS15260 (HHJ48_15265) - 3104251..3104358 (-) 108 WP_074147515.1 transposase domain-containing protein -
  HHJ48_RS27640 - 3104310..3104633 (+) 324 WP_352057403.1 EutP/PduV family microcompartment system protein -
  HHJ48_RS15270 (HHJ48_15275) tmaR 3104733..3105062 (-) 330 WP_000450409.1 DUF496 family protein -
  HHJ48_RS15275 (HHJ48_15280) yeeA 3105234..3106292 (-) 1059 WP_001200890.1 FUSC family protein -
  HHJ48_RS15280 (HHJ48_15285) sbmC 3106490..3106963 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  HHJ48_RS15285 (HHJ48_15290) dacD 3107082..3108248 (-) 1167 WP_033548239.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ48_RS15290 (HHJ48_15295) sbcB 3108457..3109884 (+) 1428 WP_072258000.1 exodeoxyribonuclease I Machinery gene
  HHJ48_RS15295 (HHJ48_15300) plaP 3109958..3111316 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HHJ48_RS15300 (HHJ48_15305) yoeI 3111306..3111368 (-) 63 WP_010723108.1 membrane protein YoeI -
  HHJ48_RS15305 (HHJ48_15310) yeeY 3111583..3112512 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  HHJ48_RS15310 (HHJ48_15315) yeeZ 3112558..3113382 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  HHJ48_RS15315 (HHJ48_15320) yoeB 3113465..3113719 (-) 255 WP_000767822.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HHJ48_RS15320 (HHJ48_15325) yefM 3113716..3113967 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HHJ48_RS15325 (HHJ48_15330) hisL 3114250..3114300 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54511.84 Da        Isoelectric Point: 5.4720

>NTDB_id=386656 HHJ48_RS15290 WP_072258000.1 3108457..3109884(+) (sbcB) [Escherichia coli strain SCU-387]
MMNDGKQQSTFLFHDYETFGTHPALDRPVQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTTWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSENVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=386656 HHJ48_RS15290 WP_072258000.1 3108457..3109884(+) (sbcB) [Escherichia coli strain SCU-387]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGTACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCACCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGAGAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581