Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   F1E05_RS04055 Genome accession   NZ_CP043929
Coordinates   850102..851538 (+) Length   478 a.a.
NCBI ID   WP_150046974.1    Uniprot ID   -
Organism   Methylomonas rhizoryzae strain GJ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 845102..856538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1E05_RS04025 - 845814..846632 (-) 819 WP_150046962.1 ABC transporter ATP-binding protein -
  F1E05_RS04030 - 846772..847752 (+) 981 WP_150046964.1 SIS domain-containing protein -
  F1E05_RS04035 kdsC 847759..848304 (+) 546 WP_150046965.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  F1E05_RS04040 lptC 848301..848867 (+) 567 WP_150046967.1 LPS export ABC transporter periplasmic protein LptC -
  F1E05_RS04045 lptA 848854..849360 (+) 507 WP_150046970.1 lipopolysaccharide transport periplasmic protein LptA -
  F1E05_RS04050 lptB 849362..850087 (+) 726 WP_150046972.1 LPS export ABC transporter ATP-binding protein -
  F1E05_RS04055 rpoN/rpoN1 850102..851538 (+) 1437 WP_150046974.1 RNA polymerase factor sigma-54 Machinery gene
  F1E05_RS04060 hpf 851580..851870 (+) 291 WP_150046976.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  F1E05_RS04065 rapZ 851928..852785 (+) 858 WP_150046978.1 RNase adapter RapZ -
  F1E05_RS04070 mgtE 852817..854175 (+) 1359 WP_150046980.1 magnesium transporter -
  F1E05_RS04075 minC 854248..854988 (+) 741 WP_150046982.1 septum site-determining protein MinC -
  F1E05_RS04080 minD 855010..855822 (+) 813 WP_150046983.1 septum site-determining protein MinD -
  F1E05_RS04085 minE 855822..856076 (+) 255 WP_150051785.1 cell division topological specificity factor MinE -
  F1E05_RS04090 - 856154..856351 (+) 198 WP_150046985.1 winged helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 54023.09 Da        Isoelectric Point: 4.4990

>NTDB_id=386589 F1E05_RS04055 WP_150046974.1 850102..851538(+) (rpoN/rpoN1) [Methylomonas rhizoryzae strain GJ1]
MKQSLQLRIGQSLTMTPQLQQAIKLLQMSTLDLQQEIQQALESNMMLEIEEDDLPTLEYRDKKADNNDQMTSEGSQTDMP
DELPVDVSWDDVYESTLPTGEDGSDSSEFETFRGKTQTLQDHLLWQLDLTHLSERDYAIATAIIDAINDDGYITGELHDI
YQGLLEQLDDLEMDEVQAVLHMIQNFDPVGVGALNLADCLCLQLRQLPDDTPYKEDALEFAGRHLELLTSCDQARLIKRV
GFSEEQLKGVLALIRSLDPKPGARLQEADVEYVVPDVFVAKVKDQWQVALNPDIAPKLRINPFYSGMIKRADNSQDNVSM
KNHLQEARWFIKSLHSRNDTLLRVAKSIVEKQGEFFEHGPIAMKAMVLRDIAEELDLHESTISRVTTQKYMHTPQGVIEF
KYFFSSHVSTDSGGECSATAIRALIKELVGNENPAKPLSDSKISDLLNEKGINVARRTIAKYREAMSIPSTSQRKRLI

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=386589 F1E05_RS04055 WP_150046974.1 850102..851538(+) (rpoN/rpoN1) [Methylomonas rhizoryzae strain GJ1]
ATGAAGCAATCCTTACAACTTCGCATCGGTCAAAGCTTGACCATGACGCCGCAGCTGCAGCAGGCCATCAAGCTGCTGCA
GATGTCGACCTTGGACCTGCAACAAGAAATTCAGCAGGCACTCGAATCCAACATGATGCTGGAAATCGAAGAAGACGATC
TGCCGACGTTGGAATATCGGGATAAGAAAGCCGACAACAACGACCAAATGACCAGCGAGGGTTCGCAAACCGATATGCCG
GACGAACTGCCGGTCGACGTTAGTTGGGACGACGTTTACGAAAGCACGCTGCCGACCGGAGAAGATGGCTCGGACAGTAG
CGAATTCGAAACTTTTCGCGGTAAAACCCAAACCTTGCAAGATCATTTGCTTTGGCAATTGGATTTAACGCATCTCTCCG
AACGCGACTACGCAATAGCCACCGCCATTATCGACGCTATCAACGATGACGGCTACATCACCGGCGAATTGCACGATATT
TACCAAGGTCTGCTGGAACAATTGGACGATTTGGAAATGGACGAAGTGCAGGCCGTGCTGCACATGATTCAAAATTTCGA
TCCGGTCGGCGTGGGTGCGTTGAACTTGGCCGATTGCCTGTGTTTACAGCTAAGGCAACTGCCGGACGATACCCCTTACA
AGGAAGATGCTCTGGAATTTGCCGGCCGCCATCTGGAGTTGCTGACCAGTTGCGATCAAGCCCGTTTGATCAAACGGGTT
GGTTTCAGCGAAGAACAGCTGAAAGGTGTTCTGGCCCTGATTCGCAGCCTGGACCCTAAGCCGGGCGCGAGGCTGCAGGA
AGCCGACGTCGAATACGTGGTCCCCGACGTGTTCGTTGCCAAGGTAAAAGACCAATGGCAAGTGGCCTTGAATCCCGACA
TCGCGCCCAAATTGCGCATCAATCCGTTTTATTCGGGCATGATCAAACGGGCCGACAACAGTCAAGACAATGTCAGCATG
AAGAACCATTTGCAGGAAGCACGCTGGTTCATCAAAAGCCTGCACAGCCGCAACGATACCTTGTTGCGGGTGGCCAAAAG
CATTGTGGAAAAACAAGGCGAGTTCTTCGAGCATGGCCCCATCGCGATGAAAGCCATGGTGCTAAGAGACATCGCCGAAG
AACTGGATTTGCATGAATCGACCATCTCGCGGGTCACCACGCAAAAATACATGCACACTCCGCAAGGCGTCATCGAATTC
AAATATTTCTTTTCCAGCCACGTCAGCACCGACAGCGGCGGCGAATGCTCGGCTACGGCAATACGGGCGTTAATCAAAGA
ACTGGTCGGCAACGAAAACCCGGCCAAACCCTTAAGCGATAGTAAAATATCCGACTTATTGAACGAGAAAGGCATCAATG
TGGCGCGTCGTACCATCGCCAAATACCGCGAAGCCATGTCGATTCCTTCCACCAGCCAAAGGAAACGGCTAATTTAA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-476)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(109-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

46.23

100

0.487

Multiple sequence alignment