Detailed information NTG0386557

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HH200_RS09820
• Genome accession: NZ_CP051663
• Coordinates: 1960483..1961475 (-)
• Length: 330 a.a.
• NCBI ID: WP_234976398.1
• Uniprot ID: -
• Organism: Escherichia coli strain 1162invT2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1955483..1966475

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HH200_RS09800 (HH200_09700)	ygbM	1956121..1956897 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
HH200_RS09805 (HH200_09705)	ygbN	1956986..1958350 (+)	1365	WP_000104433.1	GntP family transporter	-
HH200_RS09810 (HH200_09710)	-	1958493..1959536 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
HH200_RS09815 (HH200_09715)	-	1959761..1960312 (+)	552	WP_001179444.1	flavodoxin family protein	-
HH200_RS09820 (HH200_09720)	rpoS	1960483..1961475 (-)	993	WP_234976398.1	RNA polymerase sigma factor RpoS	Regulator
HH200_RS09825 (HH200_09725)	nlpD	1961538..1962632 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
HH200_RS09830 (HH200_09730)	pcm	1962817..1963443 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HH200_RS09835 (HH200_09735)	surE	1963437..1964198 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HH200_RS09840 (HH200_09740)	truD	1964179..1965228 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
HH200_RS09845 (HH200_09745)	ispF	1965225..1965704 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HH200_RS09850 (HH200_09750)	ispD	1965704..1966414 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37938.83 Da
• Isoelectric Point: 4.5597

>NTDB_id=386557 HH200_RS09820 WP_234976398.1 1960483..1961475(-) (rpoS) [Escherichia coli strain 1162invT2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRLGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=386557 HH200_RS09820 WP_234976398.1 1960483..1961475(-) (rpoS) [Escherichia coli strain 1162invT2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTAGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712