Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ENTCL_RS14110 Genome accession   NC_014618
Coordinates   3011777..3012391 (-) Length   204 a.a.
NCBI ID   WP_013366819.1    Uniprot ID   E3G183
Organism   [Enterobacter] lignolyticus SCF1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3006777..3017391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ENTCL_RS14095 (Entcl_2835) helD 3007002..3009056 (-) 2055 WP_013366816.1 DNA helicase IV -
  ENTCL_RS14100 (Entcl_2836) - 3009181..3009627 (+) 447 WP_013366817.1 YccF domain-containing protein -
  ENTCL_RS14105 (Entcl_2837) yccS 3009645..3011780 (+) 2136 WP_013366818.1 YccS family putative transporter -
  ENTCL_RS14110 (Entcl_2838) sxy/tfoX 3011777..3012391 (-) 615 WP_013366819.1 TfoX/Sxy family DNA transformation protein Regulator
  ENTCL_RS14115 (Entcl_2839) sulA 3012607..3013107 (+) 501 WP_013366820.1 SOS-induced cell division inhibitor SulA -
  ENTCL_RS14120 (Entcl_2840) ompA 3013458..3014513 (+) 1056 WP_125452100.1 porin OmpA -
  ENTCL_RS14125 (Entcl_2841) matP 3014580..3015032 (-) 453 WP_013366822.1 macrodomain Ter protein MatP -
  ENTCL_RS14130 (Entcl_2842) - 3015217..3016974 (+) 1758 WP_013366823.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23550.23 Da        Isoelectric Point: 10.2029

>NTDB_id=38651 ENTCL_RS14110 WP_013366819.1 3011777..3012391(-) (sxy/tfoX) [[Enterobacter] lignolyticus SCF1]
MKKLSYQRIYESEECLSPLGKIRHRALFGGYSLSVDDTVFAMVAEGELYLRVCEESATYHVTHPPTLLTLSKRGRRVSLN
YYRVDDDLWLNRPLLLQLSKQSLGEALQEKRRRRGTGRLKDLPNISFQLEMLLHESGVKDPQTLRALGSATVWFRLRRLR
KDLNVSVLFALEGAILGLHAAAIPHQRRQHLQEWAEMLTQEKRG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=38651 ENTCL_RS14110 WP_013366819.1 3011777..3012391(-) (sxy/tfoX) [[Enterobacter] lignolyticus SCF1]
ATGAAAAAATTATCGTATCAACGGATCTATGAATCTGAAGAATGTTTGTCGCCTCTGGGAAAGATTCGCCATCGCGCGCT
GTTTGGCGGGTACAGCCTCTCCGTCGACGACACGGTATTCGCCATGGTGGCGGAGGGGGAGCTGTACCTCAGGGTATGCG
AGGAAAGCGCGACCTATCACGTTACGCATCCGCCGACGCTGCTGACGCTCTCGAAACGCGGCAGGCGCGTTTCCCTGAAC
TATTACCGGGTGGATGACGACCTCTGGCTGAACAGGCCTTTGCTGTTGCAGCTGTCAAAGCAGTCGCTTGGCGAAGCGCT
GCAGGAGAAACGGCGACGACGGGGAACGGGGCGGCTGAAGGATTTACCGAATATCTCGTTCCAGCTGGAGATGCTGCTGC
ATGAAAGCGGCGTCAAGGATCCGCAAACGCTTCGCGCGCTGGGCTCCGCCACCGTCTGGTTTCGGCTGCGCAGGCTCAGA
AAAGATTTGAACGTGAGCGTTCTGTTTGCTCTGGAAGGCGCAATACTTGGGCTCCATGCGGCGGCTATTCCGCACCAGCG
GCGTCAGCATCTGCAGGAATGGGCTGAGATGCTGACACAGGAGAAGAGAGGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E3G183

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.794

97.549

0.574

Multiple sequence alignment