Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AT571_RS04870 Genome accession   NZ_CP043910
Coordinates   1036183..1037001 (-) Length   272 a.a.
NCBI ID   WP_000149378.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1031183..1042001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT571_RS04855 (AT571_04855) pilE 1031400..1031825 (-) 426 WP_000788346.1 type IV pilin protein Machinery gene
  AT571_RS04860 (AT571_04860) pilY2 1031822..1032304 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  AT571_RS04865 (AT571_04865) pilY1 1032317..1036171 (-) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  AT571_RS04870 (AT571_04870) pilX 1036183..1037001 (-) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AT571_RS04875 (AT571_04875) pilW 1036998..1037999 (-) 1002 WP_000079196.1 PilW family protein Machinery gene
  AT571_RS04880 (AT571_04880) pilV 1038000..1038560 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AT571_RS04885 (AT571_04885) fimU 1038554..1039027 (-) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AT571_RS04890 (AT571_04890) ispH 1039197..1040147 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AT571_RS04895 (AT571_04895) gmk 1040270..1040899 (+) 630 WP_000015937.1 guanylate kinase -
  AT571_RS04900 (AT571_04900) rpoZ 1040972..1041250 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AT571_RS04905 (AT571_04905) - 1041289..1041419 (+) 131 Protein_941 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28862.69 Da        Isoelectric Point: 5.6905

>NTDB_id=386505 AT571_RS04870 WP_000149378.1 1036183..1037001(-) (pilX) [Acinetobacter baumannii strain AB043]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMTDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=386505 AT571_RS04870 WP_000149378.1 1036183..1037001(-) (pilX) [Acinetobacter baumannii strain AB043]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGACTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment