Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   F2A31_RS14315 Genome accession   NZ_CP043909
Coordinates   3074732..3075058 (-) Length   108 a.a.
NCBI ID   WP_150027139.1    Uniprot ID   -
Organism   Acinetobacter suaedae strain C16S1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3069732..3080058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS14295 (F2A31_14295) - 3070036..3070644 (-) 609 WP_150027134.1 FHA domain-containing protein -
  F2A31_RS14300 (F2A31_14300) gspD 3070723..3072933 (-) 2211 WP_150027136.1 type II secretion system secretin GspD -
  F2A31_RS14305 (F2A31_14305) - 3072975..3073814 (-) 840 WP_150027138.1 type II secretion system protein N -
  F2A31_RS14310 (F2A31_14310) gspN 3073814..3074557 (-) 744 WP_150027824.1 type II secretion system protein N -
  F2A31_RS14315 (F2A31_14315) hns 3074732..3075058 (-) 327 WP_150027139.1 H-NS family nucleoid-associated regulatory protein Regulator
  F2A31_RS14320 (F2A31_14320) - 3075485..3075922 (-) 438 WP_150027141.1 thioesterase family protein -
  F2A31_RS14325 (F2A31_14325) - 3075931..3077124 (-) 1194 WP_150027143.1 heme biosynthesis protein HemY -
  F2A31_RS14330 (F2A31_14330) - 3077130..3077954 (-) 825 WP_150027145.1 hypothetical protein -
  F2A31_RS14335 (F2A31_14335) - 3077951..3078727 (-) 777 WP_150027147.1 uroporphyrinogen-III synthase -
  F2A31_RS14340 (F2A31_14340) hemC 3078727..3079644 (-) 918 WP_150027149.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12207.92 Da        Isoelectric Point: 5.3232

>NTDB_id=386487 F2A31_RS14315 WP_150027139.1 3074732..3075058(-) (hns) [Acinetobacter suaedae strain C16S1]
MKPDISDLSVEDLKRLQAEAEALIESKKDQAIEDAYNQIIAIADGIGLSVEELLAIGEQKRKKTTRKAVEPRYRNKNNTA
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=386487 F2A31_RS14315 WP_150027139.1 3074732..3075058(-) (hns) [Acinetobacter suaedae strain C16S1]
ATGAAACCAGACATTAGTGATTTATCAGTTGAAGATTTAAAGCGTTTGCAAGCAGAAGCAGAAGCTTTAATTGAAAGTAA
AAAAGACCAAGCAATTGAAGATGCATATAATCAAATCATTGCAATTGCGGATGGTATTGGTTTAAGTGTTGAAGAATTAT
TGGCTATAGGTGAGCAAAAGCGTAAAAAGACAACGCGTAAAGCTGTAGAGCCACGTTACCGTAATAAAAATAATACTGCA
GAAACTTGGACTGGTCGTGGTAAACAACCGCGTTGGTTAGTTGCGGAGTTGGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843

Multiple sequence alignment