Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   F2A31_RS13245 Genome accession   NZ_CP043909
Coordinates   2854852..2855736 (-) Length   294 a.a.
NCBI ID   WP_150026825.1    Uniprot ID   A0A5P1UUG2
Organism   Acinetobacter suaedae strain C16S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2849852..2860736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS13225 (F2A31_13225) - 2850457..2851536 (+) 1080 WP_150026817.1 PhoH family protein -
  F2A31_RS13230 (F2A31_13230) ybeY 2851555..2852040 (+) 486 WP_150026819.1 rRNA maturation RNase YbeY -
  F2A31_RS13235 (F2A31_13235) - 2852052..2852351 (+) 300 WP_150026821.1 antibiotic biosynthesis monooxygenase -
  F2A31_RS13240 (F2A31_13240) - 2852423..2854582 (-) 2160 WP_150026823.1 TonB-dependent siderophore receptor -
  F2A31_RS13245 (F2A31_13245) tonB2 2854852..2855736 (-) 885 WP_150026825.1 energy transducer TonB Machinery gene
  F2A31_RS13250 (F2A31_13250) - 2855970..2856653 (+) 684 WP_150026827.1 hypothetical protein -
  F2A31_RS13255 (F2A31_13255) - 2856848..2857564 (+) 717 WP_150026829.1 DUF3108 domain-containing protein -
  F2A31_RS13260 (F2A31_13260) - 2857709..2858284 (+) 576 WP_150026831.1 xanthine phosphoribosyltransferase -
  F2A31_RS13265 (F2A31_13265) - 2858324..2858593 (-) 270 WP_150026833.1 hypothetical protein -
  F2A31_RS13270 (F2A31_13270) thyA 2858811..2859653 (+) 843 WP_150026835.1 thymidylate synthase -
  F2A31_RS13275 (F2A31_13275) - 2859674..2860183 (+) 510 WP_150026837.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33421.05 Da        Isoelectric Point: 8.4413

>NTDB_id=386482 F2A31_RS13245 WP_150026825.1 2854852..2855736(-) (tonB2) [Acinetobacter suaedae strain C16S1]
MLNKINFRTQLTSIWWQDPIFIGAIVVAILIHGLVLTTQFSRPAPTDTSTKEIAVSVRPSQDKVKHADFLAQTDQQGSGE
FHQAHRMSTDMPAPMQTDATAGEHELESLEAIQQKRELLFEEKVLMTVLSWQKQAEQNERKKALEELQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLAGEVRLMVILNVQGGIRAIRL
IESSGHPLLDEAARASVRRGAPFGAFDSNMKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=386482 F2A31_RS13245 WP_150026825.1 2854852..2855736(-) (tonB2) [Acinetobacter suaedae strain C16S1]
ATGTTGAATAAAATAAATTTTCGTACTCAACTGACTTCCATTTGGTGGCAAGATCCAATTTTTATTGGGGCGATTGTTGT
TGCGATCTTGATACATGGTCTTGTACTGACAACGCAGTTTTCAAGGCCTGCACCAACTGATACTTCGACTAAAGAAATTG
CTGTGTCTGTTAGGCCAAGTCAAGATAAGGTCAAACATGCGGACTTCCTAGCACAGACTGATCAACAAGGATCGGGTGAG
TTTCATCAAGCACATCGTATGTCTACTGATATGCCTGCTCCAATGCAAACTGATGCAACGGCAGGGGAGCATGAGCTTGA
AAGTCTCGAAGCGATACAACAAAAACGTGAGCTCCTCTTTGAGGAAAAGGTGCTAATGACGGTGTTGAGTTGGCAAAAAC
AAGCTGAGCAGAATGAACGTAAGAAAGCATTAGAAGAATTACAAAGTCAATTTCAAGCCAAAGCTGCGATGGTGGCAAGT
TTAGAAGCGCAGTATTTACAGCGACAACAAAATTTTAGCCGTAAGCAACGTATTAAAACGGTTGATGGAATACAAGCGAA
ACAAGATGCATCGGCAGCTTATCTCGATAAATTTCGACAAAAAGTTGAGTTGTATGGCAATCGTTATTATCCCGATGCGG
CAAAGCAACAACGCTTAGCAGGTGAAGTCCGTTTAATGGTGATCTTGAATGTGCAAGGTGGTATTCGTGCCATTCGTTTA
ATTGAGAGCTCAGGGCATCCACTTTTGGACGAGGCAGCTCGGGCTTCTGTTCGCCGTGGCGCACCATTTGGAGCTTTTGA
CAGCAATATGAAGGATATTTCTGAGCTAAGGATTATCCGAACATGGCGTTTTGATCCAGTCGATGCAGAATTTGAAGTGC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1UUG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

75.51

100

0.755

Multiple sequence alignment