Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   F2A31_RS07155 Genome accession   NZ_CP043909
Coordinates   1524842..1525294 (+) Length   150 a.a.
NCBI ID   WP_150025800.1    Uniprot ID   -
Organism   Acinetobacter suaedae strain C16S1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519842..1530294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS07120 (F2A31_07120) kdsB 1519933..1520694 (+) 762 WP_150025794.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  F2A31_RS07125 (F2A31_07125) - 1520696..1521679 (+) 984 WP_150025795.1 DNA polymerase III subunit delta' -
  F2A31_RS07130 (F2A31_07130) - 1521829..1522137 (+) 309 WP_150025796.1 hypothetical protein -
  F2A31_RS07135 (F2A31_07135) - 1522441..1522785 (+) 345 WP_150025797.1 PilZ domain-containing protein -
  F2A31_RS07140 (F2A31_07140) - 1522806..1523579 (+) 774 WP_150025798.1 TatD family hydrolase -
  F2A31_RS07145 (F2A31_07145) - 1523621..1524238 (+) 618 WP_150027704.1 TetR/AcrR family transcriptional regulator -
  F2A31_RS07150 (F2A31_07150) - 1524241..1524852 (+) 612 WP_150025799.1 type II secretion system protein -
  F2A31_RS07155 (F2A31_07155) xcpV 1524842..1525294 (+) 453 WP_150025800.1 type II secretion system minor pseudopilin GspI Machinery gene
  F2A31_RS07160 (F2A31_07160) xcpW 1525300..1525986 (+) 687 WP_228715655.1 type II secretion system minor pseudopilin GspJ Machinery gene
  F2A31_RS07165 (F2A31_07165) gspK 1525988..1526965 (+) 978 WP_150025801.1 type II secretion system minor pseudopilin GspK -
  F2A31_RS07170 (F2A31_07170) - 1527051..1527647 (+) 597 WP_150025802.1 6-carboxytetrahydropterin synthase -
  F2A31_RS07175 (F2A31_07175) ung 1527695..1528408 (+) 714 WP_150025803.1 uracil-DNA glycosylase -
  F2A31_RS07180 (F2A31_07180) - 1528405..1529529 (+) 1125 WP_171490647.1 enoyl-CoA hydratase/isomerase family protein -
  F2A31_RS07185 (F2A31_07185) tadA 1529534..1530046 (+) 513 WP_150027710.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16790.48 Da        Isoelectric Point: 9.0137

>NTDB_id=386476 F2A31_RS07155 WP_150025800.1 1524842..1525294(+) (xcpV) [Acinetobacter suaedae strain C16S1]
MKIKALTDLPEKAFRPAEWSCSARFNRVSGFTLLEVMVALAIFAVAAIALTKIAMQYTQATSNAILRTKAQFVAMNEVAM
MEINKEWLDGTQSKQVTSQGETWQIDKKAQATISPKIQRIELQVSLFNVDQDKVEAGISHLVFFNHPKES

Nucleotide


Download         Length: 453 bp        

>NTDB_id=386476 F2A31_RS07155 WP_150025800.1 1524842..1525294(+) (xcpV) [Acinetobacter suaedae strain C16S1]
ATGAAAATTAAGGCTTTAACAGATCTTCCAGAGAAAGCTTTTCGTCCTGCAGAGTGGTCGTGCAGTGCTCGATTTAATCG
TGTCTCAGGATTTACCTTACTTGAAGTAATGGTCGCTTTGGCAATTTTTGCTGTGGCTGCAATTGCACTAACAAAAATAG
CGATGCAATATACACAAGCAACATCAAATGCAATTTTACGTACAAAAGCACAGTTTGTTGCAATGAATGAAGTTGCGATG
ATGGAAATTAACAAAGAGTGGTTGGATGGTACGCAATCCAAACAAGTTACATCGCAAGGTGAAACTTGGCAAATTGACAA
AAAGGCACAAGCAACAATTAGTCCTAAGATACAGCGGATTGAATTACAGGTGAGTTTGTTTAATGTCGATCAGGATAAGG
TTGAAGCTGGCATTAGTCATCTTGTATTTTTCAATCATCCAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(67-126)

Prokaryotic N-terminal methylation motif (N_methyl)

(26-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

82.203

78.667

0.647

Multiple sequence alignment