Detailed information NTG0386468

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HH201_RS07425
• Genome accession: NZ_CP051661
• Coordinates: 1495744..1496736 (-)
• Length: 330 a.a.
• NCBI ID: WP_234976398.1
• Uniprot ID: -
• Organism: Escherichia coli strain 1162T7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1490744..1501736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HH201_RS07405 (HH201_07350)	ygbM	1491382..1492158 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
HH201_RS07410 (HH201_07355)	ygbN	1492247..1493611 (+)	1365	WP_000104433.1	GntP family transporter	-
HH201_RS07415 (HH201_07360)	-	1493754..1494797 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
HH201_RS07420 (HH201_07365)	-	1495022..1495573 (+)	552	WP_001179444.1	flavodoxin family protein	-
HH201_RS07425 (HH201_07370)	rpoS	1495744..1496736 (-)	993	WP_234976398.1	RNA polymerase sigma factor RpoS	Regulator
HH201_RS07430 (HH201_07375)	nlpD	1496799..1497893 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
HH201_RS07435 (HH201_07380)	pcm	1498078..1498704 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HH201_RS07440 (HH201_07385)	surE	1498698..1499459 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HH201_RS07445 (HH201_07390)	truD	1499440..1500489 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
HH201_RS07450 (HH201_07395)	ispF	1500486..1500965 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HH201_RS07455 (HH201_07400)	ispD	1500965..1501675 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37938.83 Da
• Isoelectric Point: 4.5597

>NTDB_id=386468 HH201_RS07425 WP_234976398.1 1495744..1496736(-) (rpoS) [Escherichia coli strain 1162T7]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRLGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=386468 HH201_RS07425 WP_234976398.1 1495744..1496736(-) (rpoS) [Escherichia coli strain 1162T7]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTAGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712