Detailed information NTG0386403

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HH202_RS16210
• Genome accession: NZ_CP051659
• Coordinates: 3255540..3256532 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1162C
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3250540..3261532

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HH202_RS16190 (HH202_16020)	ygbM	3251178..3251954 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
HH202_RS16195 (HH202_16025)	ygbN	3252043..3253407 (+)	1365	WP_000104433.1	GntP family transporter	-
HH202_RS16200 (HH202_16030)	-	3253550..3254593 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
HH202_RS16205 (HH202_16035)	-	3254818..3255369 (+)	552	WP_001179444.1	flavodoxin family protein	-
HH202_RS16210 (HH202_16040)	rpoS	3255540..3256532 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HH202_RS16215 (HH202_16045)	nlpD	3256595..3257689 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
HH202_RS16220 (HH202_16050)	pcm	3257874..3258500 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HH202_RS16225 (HH202_16055)	surE	3258494..3259255 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HH202_RS16230 (HH202_16060)	truD	3259236..3260285 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
HH202_RS16235 (HH202_16065)	ispF	3260282..3260761 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HH202_RS16240 (HH202_16070)	ispD	3260761..3261471 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=386403 HH202_RS16210 WP_000081550.1 3255540..3256532(-) (rpoS) [Escherichia coli strain 1162C]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=386403 HH202_RS16210 WP_000081550.1 3255540..3256532(-) (rpoS) [Escherichia coli strain 1162C]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715