Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBIF_RS10455 Genome accession   NC_014616
Coordinates   241794..243734 (+) Length   646 a.a.
NCBI ID   WP_041775323.1    Uniprot ID   A0A133KKD1
Organism   Bifidobacterium bifidum S17     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 236794..248734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBIF_RS01040 (BBIF_0211) - 237247..238239 (+) 993 WP_041775321.1 aldo/keto reductase -
  BBIF_RS01045 - 238627..238914 (-) 288 WP_041775322.1 DUF1778 domain-containing protein -
  BBIF_RS01050 (BBIF_0212) - 239118..239648 (+) 531 WP_003811587.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBIF_RS01055 (BBIF_0213) rcrP 239860..241743 (+) 1884 WP_013362999.1 ABC transporter ATP-binding protein Regulator
  BBIF_RS10455 (BBIF_0214) rcrQ 241794..243734 (+) 1941 WP_041775323.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 70388.06 Da        Isoelectric Point: 6.4346

>NTDB_id=38636 BBIF_RS10455 WP_041775323.1 241794..243734(+) (rcrQ) [Bifidobacterium bifidum S17]
MGGGRTVEKPANFGNVMGKLVHYCRNYLPVIIIALVLGAAGTICQIIGPDKLKDMTNEIVKGLPAVVNGKPVMNSVDFNA
VGRIAWLLVALYVGYAVLSYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQTLGQSL
GSLITSATLFVGALVMMFYNNVIMTLCAIGASILGLIIMMVIMKSSQKYFARQQMALGDVNGHIEEMYAGHLIVKAYNGE
ADSIRRFEKYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVIVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPLSQFAQ
AFQNLQRCAAAAERVFGFLEEPEMDAEPTKAELGVADAAASTARTDSGKLSHRGTRANATAGMTASQRSQLLGYDAAGNP
RTVRGDVEFSHVRFGYEPGKPIIHDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGIDTTSVPRWNVH
DQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQIVSACKAVGLDHFVRSLPQGYDTVLDDNTSLSQGQRQLLTIARAMVQD
APILILDEATSSVDTRTEELIQKAMDALTVGRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNS
QFTLTD

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=38636 BBIF_RS10455 WP_041775323.1 241794..243734(+) (rcrQ) [Bifidobacterium bifidum S17]
ATGGGCGGCGGCCGCACGGTCGAAAAGCCTGCCAATTTCGGCAACGTGATGGGCAAGCTCGTCCACTACTGCCGCAACTA
CCTGCCCGTCATCATCATTGCGCTCGTGCTGGGCGCGGCTGGCACGATATGCCAGATCATCGGACCGGACAAACTCAAGG
ACATGACCAACGAGATCGTCAAGGGGCTGCCGGCCGTCGTGAACGGCAAGCCGGTGATGAACTCGGTCGATTTCAACGCC
GTCGGCCGCATCGCCTGGCTGCTCGTCGCACTGTACGTCGGCTACGCGGTGCTCAGCTACGTGCAAAGCTGGATGATGGC
GAACGTCACCCAGCGCACCGCCCAGCGCCTGCGCGAATCGATCTCGGTCAAAATCAACAAGCTGCCGCTCAAATACTTCG
ACAAGGTCAGCTACGGCGACGTACTCTCCCGCATCACCAACGACGTCGACGCCATCGGCCAGACGCTCGGCCAGTCCCTC
GGCTCGCTCATCACCTCGGCGACGCTGTTCGTTGGCGCGCTCGTCATGATGTTCTACAACAACGTCATCATGACCCTGTG
CGCGATCGGCGCGAGCATACTGGGACTCATCATCATGATGGTCATCATGAAATCCTCGCAGAAATACTTCGCCCGCCAGC
AGATGGCGCTCGGCGACGTCAACGGCCACATCGAGGAGATGTACGCCGGTCACCTCATCGTCAAGGCGTACAACGGCGAG
GCCGACTCAATCCGCCGCTTTGAGAAGTACAACGCCGACCTGTACGAATCCGGCTGGAAATCGCAGTTCCTGTCAGGCCT
GATGATGCCGCTGATGAACTTCGTCGGCAACTTTGGCTACGTGATCGTGTGCGTGGTCGGTGCGGCGCTCGCCATGGACG
GACAGATCGAATTCGGCGTGATCGTCGCGTTCATGATGTACATCCGTCTGTTCACCCAGCCGTTGAGCCAGTTCGCGCAG
GCGTTCCAGAACCTGCAGCGATGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTCGAAGAGCCGGAGATGGATGCGGA
ACCGACCAAGGCCGAACTCGGCGTGGCTGATGCCGCCGCGAGCACGGCACGGACGGACAGCGGCAAGCTGTCGCATCGCG
GCACTCGCGCGAATGCCACCGCCGGTATGACGGCTTCGCAGCGTTCGCAGCTGCTCGGCTACGATGCGGCCGGCAACCCC
CGGACCGTGCGCGGCGACGTCGAATTCAGTCACGTGCGATTCGGCTATGAGCCCGGCAAGCCGATCATCCACGACTTCTC
GGCAAGCGTCTCCGCCGGCCAGAAAGTCGCCATCGTCGGTCCGACCGGCGCCGGCAAAACCACCATGGTCAACCTGCTGA
TGCGCTTCTACGAGATCTCCGGCGGCTCCATCTCCATCGACGGCATCGACACCACTTCCGTGCCGCGCTGGAACGTACAC
GACCAGTTCTCCATGGTCCTGCAGGATACATGGGTGTTCCGTGGCACCGTGCGCGAAAACATCGCCTACTCCAAGCCCGG
CGTCACCGACGAGCAGATCGTCTCCGCATGCAAGGCCGTCGGACTCGACCACTTCGTGCGCTCTCTGCCGCAGGGCTACG
ACACCGTGCTCGACGACAACACCTCGCTCTCCCAAGGACAGCGCCAGCTGCTCACCATCGCCCGCGCCATGGTGCAGGAC
GCTCCGATCCTCATCCTTGACGAAGCCACCTCCTCCGTCGACACCCGCACCGAAGAACTCATCCAAAAGGCCATGGATGC
GTTGACCGTGGGGCGCACGAGCTTCGTCATCGCGCACCGCCTCTCCACCATCCGCGACGCCGACATGATTCTCGTCATGA
ACCACGGCGACGTGATCGAGCGCGGTACCCACGAGGAACTGCTCGCGGCGGGAGGGTTTTACGCCGACCTCTACAACAGC
CAATTCACACTCACCGATTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(424-571)

ABC transporter transmembrane region (ABC_membrane)

(32-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133KKD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.238

97.368

0.489

Multiple sequence alignment