Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   HHJ56_RS03565 Genome accession   NZ_CP051642
Coordinates   737969..738967 (-) Length   332 a.a.
NCBI ID   WP_035684951.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP01     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 732969..743967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ56_RS03550 (HHJ56_03550) ettA 733118..734788 (+) 1671 WP_035684946.1 energy-dependent translational throttle protein EttA -
  HHJ56_RS03555 (HHJ56_03555) pepT 735095..736315 (-) 1221 WP_035684947.1 peptidase T -
  HHJ56_RS03560 (HHJ56_03560) - 736334..737875 (-) 1542 WP_035684949.1 AbgT family transporter -
  HHJ56_RS03565 (HHJ56_03565) cytR 737969..738967 (-) 999 WP_035684951.1 substrate-binding domain-containing protein Regulator
  HHJ56_RS03570 (HHJ56_03570) rbsK 739007..739933 (-) 927 WP_035684953.1 ribokinase -
  HHJ56_RS03575 (HHJ56_03575) - 740015..741280 (-) 1266 WP_035684956.1 NupC/NupG family nucleoside CNT transporter -
  HHJ56_RS03580 (HHJ56_03580) - 741578..742513 (+) 936 WP_035684959.1 nucleoside hydrolase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37432.27 Da        Isoelectric Point: 8.1228

>NTDB_id=386327 HHJ56_RS03565 WP_035684951.1 737969..738967(-) (cytR) [Avibacterium paragallinarum strain ADL-AP01]
MATMKDIARIAQVSTSTVSHVINNTGYVSEAMRERIMKVVKELNYRPSALARSLKIKQTKTLGMLVTATNNPFFAEVVSG
VEQYCNQHDYNLIISSLDGNEERLEKNIQTLIQKQVDGLLLMYSDSRHSFLKQLDVALPMVIMDWWPTALSADKIYENSE
LGAYLATKCLIEQGHKEIAIITGNLNKSLARNRLQGYKKALNEYQLAIRDEWIIESHFDFEGGVEGMKKLLQAGKRPTAV
FACSDTIAVGVYQVAWQNGLRIPQDLSVIGYDDITLAQYLAPPLTTIHQPKAELGKLAVETLLERIKNPHKSEQAILLEP
KLIWRDSVQCRK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=386327 HHJ56_RS03565 WP_035684951.1 737969..738967(-) (cytR) [Avibacterium paragallinarum strain ADL-AP01]
ATGGCAACAATGAAAGACATTGCACGCATTGCGCAGGTTTCCACCTCCACCGTGTCGCACGTGATTAATAACACGGGCTA
TGTGAGCGAAGCAATGCGAGAACGTATAATGAAGGTTGTCAAAGAGCTTAATTATCGCCCTTCCGCCTTGGCGAGAAGTT
TGAAAATCAAGCAAACCAAAACCTTGGGAATGTTGGTTACCGCAACCAACAACCCTTTTTTTGCGGAAGTGGTGAGTGGC
GTTGAGCAATATTGTAATCAGCACGATTATAATCTGATTATTTCAAGCCTAGATGGCAATGAAGAACGTTTAGAGAAAAA
TATTCAAACGCTGATTCAAAAACAGGTGGACGGCTTGTTGTTAATGTATTCTGATAGCCGTCATTCTTTTCTTAAACAGC
TTGATGTTGCCTTGCCAATGGTGATTATGGACTGGTGGCCAACAGCATTAAGTGCGGATAAAATTTATGAAAATTCTGAA
CTTGGTGCATATCTTGCGACAAAATGCTTAATTGAGCAAGGGCATAAAGAGATTGCGATTATCACAGGAAATCTGAATAA
ATCCCTCGCACGAAATCGTTTGCAAGGCTATAAAAAAGCCTTAAACGAATATCAGTTAGCCATTCGTGATGAATGGATTA
TCGAAAGCCATTTTGATTTTGAAGGTGGCGTGGAAGGAATGAAAAAGTTGTTACAAGCGGGCAAACGACCTACGGCTGTG
TTTGCGTGTAGCGACACGATTGCGGTAGGTGTTTATCAAGTGGCGTGGCAAAATGGTTTGCGTATTCCGCAAGATCTTTC
TGTGATTGGCTATGATGATATTACCCTTGCCCAATATCTCGCCCCACCGCTCACCACCATTCACCAACCTAAAGCCGAAT
TAGGCAAACTTGCGGTGGAAACGCTGTTAGAACGTATTAAAAACCCCCATAAAAGCGAACAAGCTATTTTGCTAGAACCT
AAATTAATTTGGCGGGATTCTGTGCAGTGTAGAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(170-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.69

99.096

0.373
  cytR Vibrio parahaemolyticus RIMD 2210633

37.195

98.795

0.367

Multiple sequence alignment