Detailed information NTG0386323

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: HHJ56_RS02770
• Genome accession: NZ_CP051642
• Coordinates: 573261..574682 (+)
• Length: 473 a.a.
• NCBI ID: WP_035684621.1
• Uniprot ID: -
• Organism: Avibacterium paragallinarum strain ADL-AP01
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 568261..579682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HHJ56_RS02765 (HHJ56_02765)	-	572381..573256 (+)	876	WP_035684619.1	DMT family transporter	-
HHJ56_RS02770 (HHJ56_02770)	sbcB	573261..574682 (+)	1422	WP_035684621.1	exodeoxyribonuclease I	Machinery gene
HHJ56_RS02780 (HHJ56_02780)	-	575660..576142 (-)	483	WP_081637494.1	DUF2726 domain-containing protein	-
HHJ56_RS02785 (HHJ56_02785)	-	576803..577456 (-)	654	WP_035684625.1	IS1595 family transposase	-
HHJ56_RS02790 (HHJ56_02790)	-	577606..578076 (-)	471	WP_035684628.1	ClpXP protease specificity-enhancing factor	-
HHJ56_RS02795 (HHJ56_02795)	sspA	578080..578718 (-)	639	WP_168939919.1	stringent starvation protein SspA	-
HHJ56_RS02800 (HHJ56_02800)	rpsI	579003..579395 (-)	393	WP_017806615.1	30S ribosomal protein S9	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 55031.55 Da
• Isoelectric Point: 5.9984

>NTDB_id=386323 HHJ56_RS02770 WP_035684621.1 573261..574682(+) (sbcB) [Avibacterium paragallinarum strain ADL-AP01]
MKDDFSFFIYDYESFGINPATDRPAQFAGIRTDKDFNIIGEPVMFYCKQTNDYLPSPSAVMVTGITPQECNEKGLSEPEF
AQRILQEFSVPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWVYDDARMPSF
RLENLTKANGIEHSNAHDAMADVYATIEMAKLIKQKQPRLFQFFFEHRDKKSLEAMIDTATMTPLVHVSGMLGNYRGNTT
WIAPLAWHPTNKNAVIVCDLDSNIEDLLSKSAVELQQHLYTKKSELEQQGILPVPLKLVHINKCPILAPAKTLLPENAQR
LGIDRQRCLDNLAKLRANTEIRDKVLQIFTDERVFESSDNVETELYSGFFGINDKNNMAILRDLPPEKLSEHNLTFQDKR
VEALLFHYRARHFYKTLSRAEQVRWDKYRRNKLEKSAVQFEQELQNLVEENQNHPEKLALLQQIYEYGVKLLG

Nucleotide

• Length: 1422 bp

>NTDB_id=386323 HHJ56_RS02770 WP_035684621.1 573261..574682(+) (sbcB) [Avibacterium paragallinarum strain ADL-AP01]
ATGAAAGATGATTTCAGCTTTTTTATTTATGATTACGAAAGTTTCGGCATCAATCCCGCGACGGATCGCCCCGCACAGTT
TGCGGGCATTCGTACCGATAAAGATTTCAACATTATTGGCGAGCCTGTGATGTTTTATTGCAAGCAAACCAATGATTATT
TGCCCTCGCCCAGTGCGGTGATGGTAACGGGAATTACGCCGCAAGAATGCAATGAAAAAGGCTTATCCGAACCCGAATTT
GCTCAACGCATTTTGCAAGAATTTTCCGTGCCGAACACCTGCGTAATGGGGTTTAATAATATTCGTTACGATGACGAAAT
GACCCGCTATACTTTTTACCGCAACTTTATTGATCCCTATGAATATAGCTGGAAAAACGGCAATTCTCGCTGGGATCTAT
TGGATTTGGTGCGGGCTTGTTATGCTTTGCGTCCTGAGGGAATAAATTGGGTTTATGATGACGCAAGAATGCCTTCATTC
CGCTTGGAAAATCTCACCAAAGCCAATGGAATAGAGCATAGCAATGCACACGATGCAATGGCTGATGTGTATGCCACCAT
TGAAATGGCGAAGCTGATTAAGCAAAAACAACCGAGATTGTTCCAGTTTTTCTTTGAGCATCGCGATAAAAAATCCCTTG
AAGCAATGATTGATACGGCGACGATGACCCCCTTAGTTCACGTTTCAGGAATGTTGGGAAATTATCGCGGCAATACCACT
TGGATCGCCCCGCTTGCGTGGCACCCAACCAATAAAAATGCGGTGATTGTGTGTGATTTGGATAGCAATATCGAGGATTT
ACTGAGTAAAAGTGCGGTCGAATTACAGCAACATTTATACACGAAAAAATCCGAACTCGAACAGCAAGGGATTTTACCTG
TTCCGTTAAAATTGGTGCATATTAATAAATGCCCAATTCTTGCCCCCGCGAAAACCTTATTACCTGAAAATGCTCAGCGT
TTAGGCATTGATCGCCAGCGTTGTTTGGATAATCTCGCGAAATTGCGTGCAAATACGGAAATTCGCGATAAAGTGCTACA
AATTTTTACTGACGAGCGGGTATTTGAGTCAAGTGATAATGTGGAAACGGAATTATACAGTGGCTTTTTTGGCATTAATG
ATAAAAACAATATGGCGATTTTGCGTGATTTACCGCCTGAAAAACTCTCAGAACACAATCTAACATTCCAAGATAAGCGG
GTAGAGGCGTTGTTATTCCATTACCGTGCGCGACATTTTTATAAAACTTTGAGCAGAGCAGAGCAGGTGCGATGGGATAA
ATACCGCCGTAACAAGTTAGAAAAAAGTGCGGTGCAATTTGAGCAAGAATTACAAAACCTTGTGGAAGAAAACCAAAATC
ACCCTGAAAAATTGGCATTGTTGCAGCAAATTTATGAATATGGAGTGAAGTTATTAGGCTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-468)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	56.009	98.52	0.552