Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F0T10_RS00270 Genome accession   NZ_CP043871
Coordinates   52384..55527 (-) Length   1047 a.a.
NCBI ID   WP_164823226.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NG196     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 47384..60527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0T10_RS00250 (F0T10_00285) - 47774..48337 (-) 564 WP_002214615.1 ComF family protein -
  F0T10_RS00255 (F0T10_00295) - 49237..49626 (-) 390 WP_003687278.1 endonuclease domain-containing protein -
  F0T10_RS00260 (F0T10_00300) - 49789..50168 (-) 380 Protein_48 VOC family protein -
  F0T10_RS00265 (F0T10_00305) carA 50222..51355 (-) 1134 WP_003687283.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  F0T10_RS00270 (F0T10_00315) pilC 52384..55527 (-) 3144 WP_164823226.1 PilC family type IV pilus tip adhesin Machinery gene
  F0T10_RS12330 - 56175..56582 (-) 408 WP_237082021.1 hypothetical protein -
  F0T10_RS00275 (F0T10_00330) apbC 57426..58505 (-) 1080 WP_047926213.1 iron-sulfur cluster carrier protein ApbC -
  F0T10_RS00285 (F0T10_00340) - 58872..59381 (+) 510 WP_003687293.1 protein disulfide oxidoreductase -
  F0T10_RS00290 (F0T10_00350) nadR 59722..60162 (+) 441 WP_003687296.1 MarR family adhesin repressor NadR -

Sequence

Protein


Download         Length: 1047 a.a.        Molecular weight: 115280.32 Da        Isoelectric Point: 9.8938

>NTDB_id=386321 F0T10_RS00270 WP_164823226.1 52384..55527(-) (pilC) [Neisseria gonorrhoeae strain NG196]
MNKTLKRRVFRHTALYAAILMFSHTGGGGTMAQTRKYAIVMNERNQPEVKWDGQYQKSQLREKDGERKFIYTNQKYWSGQ
QNNFISFDNTDTLVSRQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRAGLSGYSYTGVTCRSRKCPQLVY
KTRFSFDNTGLAKNTGRLDRHPDPSRENSPIYKLKDHPWLGVSFNLGAEGTDKDGRSSNKLVSSFDENNSNSNQNLVYTT
EGHRISLGDWQREHTAMAYYLNAKLHLLDKKQIENIAPGKTVRLGTLRPRVETTGRSWLDFWATWKIEDKGNITVRLDLP
EVKAGRCINKPNPNKNTKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPARPGRHSLAALN
AQDIKSREPNFNSRQTVIRLPSGVYRIAPGNSGRVAGINGNDGKNDTFGIYKDRLVTPEADEWSNILLPWTARYYGNDDI
FKTFNQPNSKTQNGKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDQRGYELKLSY
IPGTMGRKDIENQDSTLAKELRTFAEKGYVGDRYGVDGGFVLRRITDDQDRQKHFFMFGAMGLGGRGAYALDLTKIDSNN
LTGVSMFDVKDGDNNGKNRVEVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKDIVSSDNTTALYVYDLGNGSGSLIKKIE
APGGKGGLSSPTLVDKDLDGTVDIAYAGDRGGNMYRFDLSDSNPDKWSVSTIFEGGKPITSAPAVSRLADKRVVIFGTGS
DLSEEDVVGKDQQYIYGIFDDDKGTGTVKVTVQNGTGGGLLEQTLTKENNTLFLSNNKASGGSNGKGWVVRLREGERVTV
KPIVVLRTAFVTIRKYTGNDKCDAQTAILGINTADGGALTPRSARPIVPDHDSVAQYSGHKKTADGKSVPIGCMWKNGKT
ACPNGYVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRL
SWREVFF

Nucleotide


Download         Length: 3144 bp        

>NTDB_id=386321 F0T10_RS00270 WP_164823226.1 52384..55527(-) (pilC) [Neisseria gonorrhoeae strain NG196]
ATGAATAAAACTTTAAAAAGGCGGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGACGATGGCGCAAACCCGTAAATACGCTATTGTCATGAACGAACGAAATCAGCCGGAGGTAAAGTGGGATGGGC
AATATCAAAAATCACAATTAAGGGAAAAAGACGGGGAACGCAAATTTATCTATACGAACCAGAAATACTGGTCGGGTCAA
CAAAACAATTTTATCTCATTCGACAATACCGATACCCTTGTTTCCCGACAAAGCGGTACTGCCGTTTTTGGCACAGCCAC
CTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCAATTGGATTC
ATACCACCCGGGCCGGGCTGTCAGGCTACTCCTACACCGGCGTCACATGCAGAAGCAGAAAATGCCCCCAACTTGTCTAT
AAAACCCGATTTTCCTTCGACAACACCGGTTTGGCAAAAAATACGGGCAGGCTGGATAGGCACCCGGACCCAAGCCGCGA
AAATTCGCCCATTTACAAATTGAAAGATCATCCATGGTTGGGCGTATCTTTCAATTTGGGCGCCGAGGGTACCGACAAAG
ATGGCAGATCATCCAACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATAGTAATCAAAACCTCGTCTATACGACA
GAAGGCCACCGTATTTCCCTTGGCGACTGGCAGCGCGAACATACCGCCATGGCCTATTATCTGAACGCCAAACTGCACCT
GCTGGATAAAAAACAGATTGAAAATATCGCGCCAGGCAAAACAGTGCGGTTGGGTACCTTGAGACCGCGCGTCGAGACGA
CAGGACGAAGCTGGCTAGATTTTTGGGCTACGTGGAAGATTGAAGATAAAGGGAACATTACAGTCCGCCTCGACCTGCCG
GAAGTCAAAGCAGGCCGCTGCATCAATAAACCGAACCCCAATAAGAATACCAAAGCCCCTTCGCCGGCACTGACCGCCCC
CGCGCTGTGGTTCGGCCCTGTGCAAAATGGTAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCGGCAGTTCGA
GCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGACCCCGCCCGGCCCGGCCGGCATTCCCTCGCCGCTTTGAAT
GCGCAGGATATCAAATCCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCCGAGCGGCGTGTACCGGAT
CGCCCCGGGCAATAGCGGCCGGGTCGCGGGTATTAATGGCAATGACGGCAAAAACGACACTTTCGGCATCTACAAGGACA
GGCTCGTCACACCTGAGGCCGACGAGTGGAGCAACATACTGCTGCCTTGGACGGCCCGGTATTACGGTAATGACGATATA
TTTAAAACATTCAACCAACCAAACAGCAAAACACAAAACGGCAAAAAACAATACAGCCAAAAATACCGCATCCGCACAAA
AGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCGGCGGGTATCTGGCAA
CTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACAGACCAACGAGGCTACGAACTGAAGCTCAGCTAC
ATCCCCGGCACGATGGGGCGTAAGGATATTGAAAACCAAGACTCCACCCTCGCCAAAGAGCTGCGCACCTTTGCCGAAAA
AGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCCGCATTACAGATGACCAGGACAGGCAAAAAC
ATTTCTTTATGTTTGGTGCGATGGGCCTGGGCGGCAGAGGCGCATACGCCTTGGATTTGACCAAAATCGACAGCAACAAC
CTGACCGGCGTTTCCATGTTTGATGTCAAAGATGGCGATAATAACGGCAAAAATCGCGTGGAAGTGAAATTAGGCTACAC
CGTCGGCACGCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAAGATA
TTGTCAGCAGCGATAATACAACCGCGCTGTATGTGTATGATTTGGGAAACGGCAGTGGTAGTCTGATTAAAAAAATCGAA
GCACCCGGCGGCAAAGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCACGGTCGATATCGCCTATGC
CGGCGACCGGGGCGGCAATATGTACCGCTTTGATTTGAGCGATTCCAATCCTGATAAATGGTCTGTAAGCACTATTTTCG
AAGGCGGGAAACCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTTATCTTCGGCACGGGCAGC
GATTTGAGTGAAGAGGATGTAGTCGGTAAGGATCAACAATATATTTACGGTATCTTTGACGACGATAAGGGGACGGGGAC
GGTTAAGGTAACGGTACAAAACGGCACGGGAGGCGGGCTGCTCGAGCAAACGCTTACGAAGGAAAATAACACCTTGTTCC
TGAGCAATAATAAGGCATCCGGCGGATCGAACGGCAAAGGGTGGGTAGTGAGATTGAGGGAAGGAGAACGCGTTACCGTC
AAACCGATTGTGGTATTGCGTACCGCCTTCGTGACCATCCGGAAATATACGGGTAATGACAAATGCGACGCGCAAACCGC
CATTTTGGGCATCAATACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATCACGATTCGG
TTGCGCAATATTCCGGCCATAAGAAAACCGCCGACGGCAAGTCCGTCCCTATAGGCTGTATGTGGAAAAACGGCAAAACC
GCCTGCCCGAACGGATATGTTTACGACAAGCCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTTCCCCGT
CACGGCAGACGGTGATGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCG
GAAAAGGTGTGCGCACCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTA
AGCTGGCGCGAAGTCTTCTTCTGA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(517-858)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

72.727

100

0.734

Multiple sequence alignment