Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HHJ56_RS00895 Genome accession   NZ_CP051642
Coordinates   183684..184190 (+) Length   168 a.a.
NCBI ID   WP_035685396.1    Uniprot ID   A0A0F5EQV1
Organism   Avibacterium paragallinarum strain ADL-AP01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 178684..189190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ56_RS00860 (HHJ56_00860) surE 178910..179650 (-) 741 WP_035685409.1 5'/3'-nucleotidase SurE -
  HHJ56_RS00865 (HHJ56_00865) truD 179659..180666 (-) 1008 WP_035685407.1 tRNA pseudouridine(13) synthase TruD -
  HHJ56_RS00870 (HHJ56_00870) ispF 180670..181146 (-) 477 WP_035685404.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HHJ56_RS00875 (HHJ56_00875) - 181279..181656 (-) 378 WP_017805060.1 hypothetical protein -
  HHJ56_RS00880 (HHJ56_00880) - 181799..182401 (+) 603 WP_035685401.1 beta-phosphoglucomutase family hydrolase -
  HHJ56_RS00885 (HHJ56_00885) - 182402..183010 (+) 609 WP_035685399.1 sugar O-acetyltransferase -
  HHJ56_RS00890 (HHJ56_00890) - 183003..183461 (+) 459 WP_035685398.1 YqaA family protein -
  HHJ56_RS00895 (HHJ56_00895) luxS 183684..184190 (+) 507 WP_035685396.1 S-ribosylhomocysteine lyase Regulator
  HHJ56_RS00900 (HHJ56_00900) hemW 184258..185412 (-) 1155 WP_035685394.1 radical SAM family heme chaperone HemW -
  HHJ56_RS00905 (HHJ56_00905) rdgB 185412..186008 (-) 597 WP_035685390.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  HHJ56_RS00910 (HHJ56_00910) comE1/comEA 186146..186502 (-) 357 WP_035685388.1 helix-hairpin-helix domain-containing protein Machinery gene
  HHJ56_RS00915 (HHJ56_00915) - 186765..188078 (-) 1314 WP_017805051.1 NCS2 family permease -
  HHJ56_RS00920 (HHJ56_00920) - 188109..188249 (+) 141 WP_156127777.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19094.95 Da        Isoelectric Point: 5.5568

>NTDB_id=386311 HHJ56_RS00895 WP_035685396.1 183684..184190(+) (luxS) [Avibacterium paragallinarum strain ADL-AP01]
MPLLDSFKVDHTKMNAPAVRVAKIMRTPKGDDITIFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNSEQVEIIDISP
MGCRTGFYMSLIGRPNEQQVVTAWLAAMKDILQVQNQNDIPELNEYQCGTYTEHSLDEAHQIARNILARGVGVNRNDDLL
LDERLLAQ

Nucleotide


Download         Length: 507 bp        

>NTDB_id=386311 HHJ56_RS00895 WP_035685396.1 183684..184190(+) (luxS) [Avibacterium paragallinarum strain ADL-AP01]
ATGCCGTTACTTGATAGTTTTAAAGTCGATCATACGAAGATGAATGCTCCCGCCGTGCGTGTTGCAAAAATAATGCGTAC
ACCAAAAGGTGATGACATTACCATTTTCGATTTACGTTTTTGTATTCCAAATAAAGAAATTTTACCGCCGAAAGGGATTC
ATACTCTTGAACATCTTTTTGCAGGTTTTATGCGGGATCACTTGAATAGTGAGCAAGTTGAGATTATTGACATTTCTCCA
ATGGGGTGCCGTACAGGGTTTTATATGTCATTAATTGGTAGACCGAATGAGCAACAAGTCGTAACAGCTTGGCTTGCGGC
AATGAAAGATATTCTACAAGTGCAAAATCAAAATGATATTCCTGAATTAAATGAATACCAATGTGGCACTTATACAGAGC
ATTCCTTAGATGAAGCTCATCAGATTGCACGCAATATTCTTGCTCGTGGTGTTGGTGTGAATAGAAATGACGATTTATTG
TTAGATGAGCGTTTGCTTGCACAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EQV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.494

98.81

0.726