Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | ACIB15232_RS09140 | Genome accession | NZ_CP043857 |
| Coordinates | 1783218..1783598 (+) | Length | 126 a.a. |
| NCBI ID | WP_138108462.1 | Uniprot ID | - |
| Organism | Aliarcobacter cibarius strain H743 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1778218..1788598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIB15232_RS09115 (ACIB15232_1805) | - | 1778287..1779138 (-) | 852 | WP_151029297.1 | outer membrane protein OmpK | - |
| ACIB15232_RS09120 (ACIB15232_1806) | - | 1779169..1780521 (-) | 1353 | WP_024774541.1 | class II 3-deoxy-7-phosphoheptulonate synthase | - |
| ACIB15232_RS09125 (ACIB15232_1807) | - | 1780583..1781575 (-) | 993 | WP_151029298.1 | transaldolase | - |
| ACIB15232_RS09130 (ACIB15232_1808) | serB | 1781602..1782225 (-) | 624 | WP_151029299.1 | phosphoserine phosphatase SerB | - |
| ACIB15232_RS09135 (ACIB15232_1809) | - | 1782307..1783221 (+) | 915 | WP_024774538.1 | methylenetetrahydrofolate reductase | - |
| ACIB15232_RS09140 (ACIB15232_1810) | dprB | 1783218..1783598 (+) | 381 | WP_138108462.1 | Holliday junction resolvase RuvX | Machinery gene |
| ACIB15232_RS09145 (ACIB15232_1811) | - | 1783656..1784246 (-) | 591 | WP_138108463.1 | hypothetical protein | - |
| ACIB15232_RS09150 (ACIB15232_1812) | - | 1784494..1785876 (+) | 1383 | WP_034218578.1 | IS5 family transposase | - |
| ACIB15232_RS09155 (ACIB15232_1813) | acpS | 1785949..1786302 (-) | 354 | WP_024774535.1 | holo-ACP synthase | - |
| ACIB15232_RS09160 (ACIB15232_1814) | - | 1786332..1787291 (+) | 960 | WP_151029300.1 | ABC transporter permease | - |
| ACIB15232_RS09165 (ACIB15232_1815) | panC | 1787319..1788137 (+) | 819 | WP_138154314.1 | pantoate--beta-alanine ligase | - |
| ACIB15232_RS09170 (ACIB15232_1816) | - | 1788154..1788588 (-) | 435 | WP_138108466.1 | META domain-containing protein | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14406.78 Da Isoelectric Point: 7.9961
>NTDB_id=386295 ACIB15232_RS09140 WP_138108462.1 1783218..1783598(+) (dprB) [Aliarcobacter cibarius strain H743]
MKLAAIDIGLKRIGVAICLTSDIVTPQMAIIRKNRNQAATDVNTFLKEWEIDKLIVGFPSSSEDSQNRIKHFVNLLELKI
PFEFQEENMSSIEAEDLIKGEIKYKRDGRVDSLAAKIILERYLQKK
MKLAAIDIGLKRIGVAICLTSDIVTPQMAIIRKNRNQAATDVNTFLKEWEIDKLIVGFPSSSEDSQNRIKHFVNLLELKI
PFEFQEENMSSIEAEDLIKGEIKYKRDGRVDSLAAKIILERYLQKK
Nucleotide
Download Length: 381 bp
>NTDB_id=386295 ACIB15232_RS09140 WP_138108462.1 1783218..1783598(+) (dprB) [Aliarcobacter cibarius strain H743]
TTGAAATTAGCTGCTATTGATATAGGACTTAAAAGAATTGGAGTTGCTATTTGCTTAACAAGTGATATCGTAACTCCTCA
AATGGCAATAATCAGAAAAAATAGAAACCAAGCTGCCACAGATGTAAATACTTTTTTAAAAGAGTGGGAAATTGACAAAC
TAATTGTTGGATTTCCTAGTTCTAGTGAAGATTCTCAAAACAGAATAAAACATTTTGTAAATTTATTAGAACTTAAAATT
CCTTTTGAATTTCAAGAAGAAAACATGAGTTCAATTGAAGCTGAAGATTTAATCAAAGGTGAAATCAAATACAAAAGAGA
CGGTAGAGTTGATTCTTTAGCTGCAAAAATAATTTTGGAAAGATATCTACAAAAAAAATAG
TTGAAATTAGCTGCTATTGATATAGGACTTAAAAGAATTGGAGTTGCTATTTGCTTAACAAGTGATATCGTAACTCCTCA
AATGGCAATAATCAGAAAAAATAGAAACCAAGCTGCCACAGATGTAAATACTTTTTTAAAAGAGTGGGAAATTGACAAAC
TAATTGTTGGATTTCCTAGTTCTAGTGAAGATTCTCAAAACAGAATAAAACATTTTGTAAATTTATTAGAACTTAAAATT
CCTTTTGAATTTCAAGAAGAAAACATGAGTTCAATTGAAGCTGAAGATTTAATCAAAGGTGAAATCAAATACAAAAGAGA
CGGTAGAGTTGATTCTTTAGCTGCAAAAATAATTTTGGAAAGATATCTACAAAAAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
48.031 |
100 |
0.484 |