Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACIB15232_RS04575 Genome accession   NZ_CP043857
Coordinates   893939..895768 (-) Length   609 a.a.
NCBI ID   WP_151029008.1    Uniprot ID   -
Organism   Aliarcobacter cibarius strain H743     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 888939..900768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIB15232_RS04560 (ACIB15232_0896) - 888976..891348 (-) 2373 WP_151029005.1 hypothetical protein -
  ACIB15232_RS04565 (ACIB15232_0897) - 891351..892862 (-) 1512 WP_151029006.1 PAS domain S-box protein -
  ACIB15232_RS04570 (ACIB15232_0898) - 892900..893925 (-) 1026 WP_151029007.1 alanine racemase -
  ACIB15232_RS04575 (ACIB15232_0899) uvrC 893939..895768 (-) 1830 WP_151029008.1 excinuclease ABC subunit UvrC Machinery gene
  ACIB15232_RS04580 (ACIB15232_0900) pnuC 895813..896418 (-) 606 WP_228268345.1 nicotinamide riboside transporter PnuC -
  ACIB15232_RS12140 - 896465..896830 (-) 366 WP_266095108.1 GGDEF domain-containing protein -
  ACIB15232_RS12145 - 896808..897386 (-) 579 WP_266095109.1 response regulator -
  ACIB15232_RS04590 (ACIB15232_0902) - 897472..900609 (-) 3138 WP_151029009.1 efflux RND transporter permease subunit -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 71013.06 Da        Isoelectric Point: 9.0230

>NTDB_id=386292 ACIB15232_RS04575 WP_151029008.1 893939..895768(-) (uvrC) [Aliarcobacter cibarius strain H743]
MNLEEKLKLLPSEAGVYQYFDNQGHLLYIGKAKSLKNRVKSYFKFNPTLQASNDLSPRIYKMISETVFLEWIVVPNEHDA
LILENSLIKQLKPKYNVLLRDDKTYPYIFVDLNEDFPRLEITRKIEKGKNIKYFGPYSSGARDMLDSIYEIIPLVQKKSC
VKSKKACLFFQIGKCLAPCENKVNKDEYKKILDEALGYIYNKSKLLNKLKEKMQFYSENFRFEEALVLRDRTKTIEKSEI
KTGIDLTTNEDLDIFAIKSSNKKAVLVRMFIRDGKLASSNYDFMKTNDDVEFDIQEAYKRAIINYYSNELPIIPKEIIVA
DEIEDIITIEEFLYKKFNKKIKIVNPKIDKKASIVKIALNNCDELLRLENIKDENSIYNELKELFSLNCVPNIIETFDNS
HLMGQATVGGMVVWNKEKENFDKKSYRHYNLESLDEYSQMKEMLYRRVESFDKNNPPDLWVIDGGTTLLNLAFDIVDSIG
VNLDIIAISKQKVDAKAYRAKGNAKDIVHFKQNGEIKSLNLLPSDKRLQFIQRLRDEAHRFAISFHKKQKRKEDKEISLL
QIKGIGEAKIKKLLLYFGEFEKIRNASFEELKSVLNEADAHNIINYFNN

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=386292 ACIB15232_RS04575 WP_151029008.1 893939..895768(-) (uvrC) [Aliarcobacter cibarius strain H743]
ATGAATTTAGAAGAAAAATTAAAACTGCTTCCATCAGAAGCCGGAGTCTATCAGTACTTTGACAATCAAGGACATCTTTT
ATACATTGGAAAGGCTAAAAGCTTAAAAAATAGAGTAAAAAGTTACTTTAAATTCAATCCTACTTTACAAGCTTCAAACG
ATTTAAGTCCACGAATTTATAAAATGATTAGCGAAACTGTTTTTTTAGAATGGATTGTTGTTCCAAATGAACATGATGCC
TTAATTCTTGAAAACTCACTAATTAAACAGCTAAAACCAAAATATAATGTACTTTTACGAGATGATAAAACATACCCTTA
TATTTTCGTAGATTTAAATGAAGATTTTCCAAGATTAGAAATCACAAGAAAAATAGAAAAAGGAAAAAATATAAAATATT
TTGGTCCATATTCAAGTGGTGCTAGAGATATGCTTGATAGCATTTATGAGATAATTCCCCTAGTTCAAAAAAAATCTTGT
GTGAAAAGTAAAAAAGCTTGCTTATTTTTTCAAATAGGAAAATGTCTAGCTCCATGTGAAAATAAAGTGAATAAAGATGA
GTATAAAAAGATTTTAGATGAAGCTTTAGGATACATCTATAATAAATCAAAACTATTAAATAAACTAAAAGAAAAAATGC
AATTTTATTCTGAAAATTTTAGATTTGAAGAGGCTTTAGTTTTACGAGATAGAACGAAAACTATTGAAAAATCAGAAATT
AAAACTGGAATTGATTTAACAACAAATGAAGATTTAGATATTTTTGCCATAAAATCTAGTAATAAAAAAGCTGTACTTGT
AAGAATGTTTATAAGAGATGGAAAACTAGCTTCCTCAAACTATGATTTCATGAAAACAAATGACGATGTTGAATTTGATA
TACAAGAAGCCTATAAAAGAGCAATAATAAATTACTATTCAAATGAATTACCAATTATTCCAAAAGAGATAATTGTGGCC
GATGAGATTGAAGATATTATCACGATTGAAGAATTTTTATATAAGAAATTCAATAAAAAAATAAAAATAGTAAACCCAAA
AATAGATAAAAAAGCTTCTATTGTAAAAATTGCTTTAAATAATTGTGATGAACTTTTAAGATTAGAAAATATTAAAGATG
AGAATTCTATATACAATGAATTAAAAGAACTGTTTTCCTTAAACTGTGTTCCAAATATAATAGAAACTTTTGACAATTCA
CATCTTATGGGACAGGCAACAGTTGGTGGAATGGTTGTATGGAATAAAGAAAAAGAGAATTTTGATAAAAAATCTTATAG
ACACTATAATCTTGAGAGCTTAGATGAATACTCTCAAATGAAAGAGATGCTATATAGAAGGGTTGAGAGTTTTGATAAAA
ATAATCCGCCAGATTTATGGGTAATTGATGGAGGGACGACTTTACTAAATTTAGCTTTTGATATAGTTGACTCAATTGGG
GTAAATTTAGATATTATTGCTATTTCAAAACAAAAAGTTGATGCAAAAGCTTATAGAGCAAAAGGAAATGCAAAAGATAT
AGTGCATTTTAAACAAAATGGTGAGATTAAAAGTCTAAATTTGCTTCCTAGCGATAAAAGACTACAATTTATTCAAAGAT
TAAGAGATGAAGCTCATCGTTTTGCAATTAGTTTTCATAAAAAGCAAAAAAGAAAAGAGGATAAAGAGATTTCGCTTCTA
CAAATTAAAGGTATTGGTGAAGCAAAAATAAAAAAATTACTCTTATATTTTGGAGAGTTTGAAAAAATCAGAAATGCTTC
TTTTGAAGAGTTAAAATCTGTCTTAAATGAAGCAGATGCACACAATATTATAAACTATTTTAATAATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(14-96)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(382-543)

UvrB/uvrC motif (UVR)

(204-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

52.013

97.865

0.509

Multiple sequence alignment