Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F1719_RS03510 Genome accession   NZ_CP043852
Coordinates   624045..624674 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli ATCC 8739     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 619045..629674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1719_RS03490 (F1719_03645) ycbZ 619446..621206 (-) 1761 WP_000156531.1 Lon protease family protein -
  F1719_RS03495 (F1719_03650) matP 621392..621844 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  F1719_RS03500 (F1719_03655) ompA 621920..622960 (-) 1041 WP_000750416.1 porin OmpA -
  F1719_RS03505 (F1719_03660) sulA 623317..623826 (-) 510 WP_029365099.1 SOS-induced cell division inhibitor SulA -
  F1719_RS03510 (F1719_03665) sxy/tfoX 624045..624674 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  F1719_RS03515 (F1719_03670) yccS 624637..626799 (-) 2163 WP_000875061.1 YccS family putative transporter -
  F1719_RS03520 (F1719_03675) yccF 626809..627255 (-) 447 WP_001261235.1 YccF domain-containing protein -
  F1719_RS03525 (F1719_03680) helD 627378..629432 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=386267 F1719_RS03510 WP_000839153.1 624045..624674(+) (sxy/tfoX) [Escherichia coli ATCC 8739]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=386267 F1719_RS03510 WP_000839153.1 624045..624674(+) (sxy/tfoX) [Escherichia coli ATCC 8739]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment