Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   F1614_RS08665 Genome accession   NZ_CP043847
Coordinates   1825000..1825896 (+) Length   298 a.a.
NCBI ID   WP_059279819.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain NCCP 16828     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820000..1830896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1614_RS08645 (F1614_08725) - 1820685..1822229 (+) 1545 WP_158171877.1 NAD(P)H-binding protein -
  F1614_RS08650 (F1614_08730) - 1822352..1823821 (-) 1470 WP_158171878.1 alkaline phosphatase -
  F1614_RS08655 (F1614_08735) - 1824119..1824298 (+) 180 WP_002456719.1 hypothetical protein -
  F1614_RS08660 (F1614_08740) braR 1824329..1824994 (+) 666 WP_017464772.1 DNA-binding response regulator Regulator
  F1614_RS08665 (F1614_08745) braS 1825000..1825896 (+) 897 WP_059279819.1 sensor histidine kinase Regulator
  F1614_RS08670 (F1614_08750) - 1826007..1826756 (+) 750 WP_059279789.1 ABC transporter ATP-binding protein -
  F1614_RS08675 (F1614_08755) - 1826758..1828770 (+) 2013 WP_017464770.1 ABC transporter permease -
  F1614_RS08680 (F1614_08760) - 1828874..1829464 (+) 591 WP_017464769.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34886.55 Da        Isoelectric Point: 7.2750

>NTDB_id=386251 F1614_RS08665 WP_059279819.1 1825000..1825896(+) (braS) [Staphylococcus epidermidis strain NCCP 16828]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLSFDAYILAISIILLLMCVRWWIKYLSFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLLLKYRIQFIEQKTQIHYKKSEDIILTDAQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNHGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=386251 F1614_RS08665 WP_059279819.1 1825000..1825896(+) (braS) [Staphylococcus epidermidis strain NCCP 16828]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTGTTTTCTTTATCTTTTGATGCATACATACTAGCAATCAGTATAATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAGTTTTAAAAAGAACGAACATCTTAAAGATAAAGTAGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAACGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATCACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTATA
CAAGTCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGCTTTTAAAATATAGAATTCAGTTTATTGAGCAAAAGACACAAATCCATTATAAAAAAAGTGAGGATAT
TATTTTAACCGATGCACAATGGGCGTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATTTGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACTGGTATAGGTTTATTTATAGT
GCAACACATTGCAAATCATCTAAACATACAAGTAACTGTACAATCAGAATTGAATCATGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

59.322

98.993

0.587

Multiple sequence alignment