Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HHJ58_RS04345 Genome accession   NZ_CP051640
Coordinates   935618..936223 (-) Length   201 a.a.
NCBI ID   WP_035685034.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930618..941223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ58_RS04325 (HHJ58_04325) hldE 931277..932704 (+) 1428 WP_035685042.1 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE -
  HHJ58_RS04330 (HHJ58_04330) - 933130..933414 (-) 285 WP_017806228.1 YcgL domain-containing protein -
  HHJ58_RS04335 (HHJ58_04335) - 933579..934181 (-) 603 WP_035685040.1 peroxiredoxin C -
  HHJ58_RS04340 (HHJ58_04340) metC 934340..935533 (+) 1194 WP_035685037.1 cystathionine beta-lyase -
  HHJ58_RS04345 (HHJ58_04345) recR 935618..936223 (-) 606 WP_035685034.1 recombination mediator RecR Machinery gene
  HHJ58_RS04350 (HHJ58_04350) - 936311..936640 (-) 330 WP_035685032.1 YbaB/EbfC family nucleoid-associated protein -
  HHJ58_RS04355 (HHJ58_04355) - 936755..938695 (+) 1941 WP_035685029.1 DNA topoisomerase III -
  HHJ58_RS04360 (HHJ58_04360) secG 938808..939146 (+) 339 WP_035685027.1 preprotein translocase subunit SecG -
  HHJ58_RS04370 (HHJ58_04370) - 939526..940032 (-) 507 WP_124994819.1 YadA C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22147.28 Da        Isoelectric Point: 5.0764

>NTDB_id=386208 HHJ58_RS04345 WP_035685034.1 935618..936223(-) (recR) [Avibacterium paragallinarum strain ADL-AP07]
MQTSPLLETLIDTLRCLPGVGPKSAQRMAYHLLQRDRSGGMDLARALTAAMSQIGHCEQCRTFTEEEVCTICENPRRQNS
GLLCVVEQPSDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLNRRLENEAFTEVILATNPTIEGEATANYIAEL
CMQRGIKVTRIAHGIPVGGELEMVDSNTLGHSFSGRREIQY

Nucleotide


Download         Length: 606 bp        

>NTDB_id=386208 HHJ58_RS04345 WP_035685034.1 935618..936223(-) (recR) [Avibacterium paragallinarum strain ADL-AP07]
ATGCAAACCAGTCCATTATTAGAAACGCTGATTGACACATTACGCTGTTTACCTGGTGTGGGACCGAAATCCGCCCAGCG
AATGGCTTATCATTTATTGCAACGCGATCGTAGCGGTGGAATGGATCTCGCCCGTGCCTTAACCGCCGCGATGTCGCAAA
TTGGGCATTGCGAACAATGTCGTACCTTCACCGAAGAAGAGGTCTGCACCATTTGTGAAAATCCACGCCGCCAAAATTCG
GGCTTGCTCTGTGTGGTGGAACAACCCTCCGATATTCAAGCCATTGAACAAACAGGGCAATTTTCAGGGCGTTATTTTGT
GCTGATGGGGCATTTATCCCCGTTAGATGGAATTGGTCCAAAAGAGATTGGACTGGATTTACTCAATCGCCGCTTAGAAA
ATGAAGCTTTTACCGAAGTTATTTTAGCCACCAACCCGACCATCGAGGGCGAAGCCACTGCCAATTATATTGCCGAGCTT
TGTATGCAACGAGGAATCAAAGTAACGCGTATCGCCCACGGTATTCCCGTCGGTGGCGAGCTGGAAATGGTTGATAGCAA
TACCCTAGGGCATTCTTTTTCGGGACGGAGAGAGATTCAATATTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

46.734

99.005

0.463
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.005

0.428