Detailed information NTG0386103

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: F1611_RS16540
• Genome accession: NZ_CP043836
• Coordinates: 4012960..4014324 (+)
• Length: 454 a.a.
• NCBI ID: WP_124316044.1
• Uniprot ID: -
• Organism: Butyricimonas faecihominis strain DSM 105721
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4007960..4019324

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F1611_RS16530 (F1611_16480)	-	4009069..4010184 (+)	1116	Protein_3246	AAA family ATPase	-
F1611_RS16535 (F1611_16485)	-	4010428..4012761 (+)	2334	WP_124316043.1	transglycosylase domain-containing protein	-
F1611_RS16540 (F1611_16490)	radA	4012960..4014324 (+)	1365	WP_124316044.1	DNA repair protein RadA	Machinery gene
F1611_RS16545 (F1611_16495)	-	4014415..4015545 (+)	1131	WP_124316319.1	AAA family ATPase	-
F1611_RS16550 (F1611_16500)	-	4015652..4016215 (+)	564	WP_124316318.1	RNA polymerase sigma-70 factor	-
F1611_RS16555 (F1611_16505)	-	4016319..4017485 (+)	1167	WP_124316317.1	FecR family protein	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49213.68 Da
• Isoelectric Point: 7.6120

>NTDB_id=386103 F1611_RS16540 WP_124316044.1 4012960..4014324(+) (radA) [Butyricimonas faecihominis strain DSM 105721]
MAKTKTVYVCQNCGAKESKWVGKCSTCGEWNSFVEEVEVSTKGNRVASIVGASSSRPLKLSEVKANADERMDTGDGELNR
VLGGGIVPGSMILLGGEPGIGKSTLVLQFALHNRCGKVLYVSGEESVSQIKMRAQRLGAENDDCLFLSGNSLETVLEHSR
ALEPKLLIIDSIQTLATESVDAIPGSLSQIRECTNVLLRYSKENTITTILIGHITKDGQLAGPKILEHMVDTVLQFEGDQ
QHMYRILRSMKNRFGSTSEIGIYEMLQSGLRQVANPSELLLSNHDQDLSGVAVSATMEGVRTILLEVQALVSTAAYGTPQ
RSATGFDTRRLNMLLAVLEKRVGFRLAAKDVFLNIAGGIRVSDPALDLGVVMAVLSSNIDAPIPTNTVFAGEVGLSGEIR
AVSRIEQRILEAEKLGFQQIFVPAGNKKALTKVPAHIKVRFVSRVRDICRELFS

Nucleotide

• Length: 1365 bp

>NTDB_id=386103 F1611_RS16540 WP_124316044.1 4012960..4014324(+) (radA) [Butyricimonas faecihominis strain DSM 105721]
ATGGCTAAAACAAAAACCGTGTACGTTTGTCAGAATTGTGGGGCAAAGGAATCCAAGTGGGTTGGGAAATGCTCTACTTG
CGGGGAGTGGAATAGTTTTGTGGAAGAGGTGGAAGTTTCTACCAAAGGAAACCGGGTGGCTTCTATCGTGGGGGCGAGTT
CTTCACGGCCTTTGAAGTTGTCGGAGGTGAAGGCGAATGCGGATGAGCGTATGGATACCGGAGATGGAGAACTGAACCGG
GTGTTGGGAGGTGGAATCGTACCGGGTTCTATGATTCTACTGGGAGGAGAACCGGGTATCGGTAAATCGACGTTGGTACT
GCAATTTGCCTTACATAATCGATGTGGGAAAGTTCTGTATGTCTCCGGGGAGGAGAGCGTGTCGCAGATCAAGATGCGGG
CGCAACGATTGGGGGCGGAGAATGACGATTGCCTGTTCCTTTCGGGGAACTCGTTGGAAACGGTATTGGAACATTCCCGT
GCGCTTGAACCGAAATTATTGATTATTGACTCTATACAAACGCTGGCAACAGAGAGTGTGGATGCCATTCCGGGGAGTTT
ATCGCAAATCCGGGAATGTACTAACGTGTTGCTGCGTTACTCGAAAGAAAATACGATTACGACTATTTTGATCGGGCATA
TCACGAAAGACGGTCAGTTGGCCGGTCCGAAGATTCTGGAACATATGGTGGATACTGTCCTGCAATTTGAGGGTGATCAG
CAACATATGTACCGTATTTTGCGCTCTATGAAGAACCGTTTTGGTTCGACTTCCGAAATCGGAATCTACGAGATGTTACA
ATCCGGTTTGCGACAGGTGGCCAATCCTTCCGAGCTGTTGCTATCCAATCATGACCAAGATTTGAGTGGAGTCGCTGTTT
CTGCCACCATGGAAGGCGTTAGAACGATTTTATTGGAAGTGCAGGCTTTGGTTAGCACGGCAGCTTACGGGACGCCCCAG
CGGTCTGCAACGGGCTTTGATACGCGACGATTGAATATGTTGCTTGCCGTGTTGGAAAAACGGGTGGGTTTCCGGTTGGC
AGCGAAGGATGTGTTCTTGAATATTGCCGGAGGAATACGGGTGAGTGACCCGGCTTTGGATTTAGGGGTCGTGATGGCGG
TTCTTTCTTCAAATATAGATGCTCCGATACCCACGAATACCGTATTTGCCGGAGAAGTTGGCTTGTCGGGAGAGATTCGT
GCCGTGAGTCGTATAGAACAACGAATACTGGAGGCTGAAAAACTCGGATTCCAACAAATATTTGTTCCGGCGGGAAATAA
GAAAGCGCTGACAAAAGTTCCCGCACATATAAAAGTGAGATTTGTTTCCCGGGTGAGAGATATTTGTCGGGAGTTATTTA
GCTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (67-218)

• Subunit ChlI of Mg-chelatase (ChlI) (340-426)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae R6	47.912	100	0.48
radA	Streptococcus pneumoniae Rx1	47.912	100	0.48
radA	Streptococcus pneumoniae D39	47.912	100	0.48
radA	Streptococcus mitis NCTC 12261	47.912	100	0.48
radA	Streptococcus pneumoniae TIGR4	47.912	100	0.48
radA	Streptococcus mitis SK321	47.912	100	0.48
radA	Bacillus subtilis subsp. subtilis str. 168	47.137	100	0.471