Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   F0362_RS21200 Genome accession   NZ_CP043830
Coordinates   4089791..4090537 (-) Length   248 a.a.
NCBI ID   WP_000487005.1    Uniprot ID   A0A2B5BXL0
Organism   Bacillus sp. BS98     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4084791..4095537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0362_RS21180 (F0362_21180) dnaG 4085551..4087347 (-) 1797 WP_000528230.1 DNA primase -
  F0362_RS21185 (F0362_21185) - 4087601..4087840 (-) 240 WP_002039621.1 DUF188 domain-containing protein -
  F0362_RS21190 (F0362_21190) - 4088209..4089021 (-) 813 WP_000368950.1 pyruvate, water dikinase regulatory protein -
  F0362_RS21195 (F0362_21195) - 4089051..4089683 (-) 633 WP_000583755.1 helix-turn-helix transcriptional regulator -
  F0362_RS21200 (F0362_21200) recO 4089791..4090537 (-) 747 WP_000487005.1 DNA repair protein RecO Machinery gene
  F0362_RS21205 (F0362_21205) - 4090571..4090714 (-) 144 WP_000883923.1 YqzL family protein -
  F0362_RS21210 (F0362_21210) era 4090887..4091792 (-) 906 WP_001080233.1 GTPase Era -
  F0362_RS21215 (F0362_21215) - 4091785..4092183 (-) 399 WP_001086291.1 cytidine deaminase -
  F0362_RS21220 (F0362_21220) - 4092282..4092635 (-) 354 WP_000715513.1 diacylglycerol kinase family protein -
  F0362_RS21225 (F0362_21225) ybeY 4092632..4093102 (-) 471 WP_149889948.1 rRNA maturation RNase YbeY -
  F0362_RS21230 (F0362_21230) - 4093099..4095243 (-) 2145 WP_149889949.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28620.17 Da        Isoelectric Point: 8.0566

>NTDB_id=386081 F0362_RS21200 WP_000487005.1 4089791..4090537(-) (recO) [Bacillus sp. BS98]
MFQKVEGIVIRTTDYGETNKIVTIFSREFGKISAMARGAKKPKSRLASVSQLMTHGHFLIQVGSGLGTLQQGEIISTMKE
IREDIFLTAYASFVVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=386081 F0362_RS21200 WP_000487005.1 4089791..4090537(-) (recO) [Bacillus sp. BS98]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAATAAGATTGTTACAATATTCTCAAG
AGAATTCGGTAAGATAAGTGCAATGGCAAGAGGAGCGAAAAAACCGAAAAGTCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGGCATTTTCTTATTCAAGTGGGATCTGGGCTTGGAACTTTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTGTTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTACTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTATTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCGGAGCAAGATCCGTATCGTATACCGGTGGG
AGAAGCTGTACATAAATTGTTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGCTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTCCTA
GAGCAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B5BXL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

56.275

99.597

0.56

Multiple sequence alignment