Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   F0362_RS06610 Genome accession   NZ_CP043830
Coordinates   1254041..1254364 (-) Length   107 a.a.
NCBI ID   WP_000578872.1    Uniprot ID   -
Organism   Bacillus sp. BS98     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1249041..1259364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0362_RS06585 (F0362_06585) - 1249270..1250556 (+) 1287 WP_000247036.1 D-alanyl-D-alanine carboxypeptidase family protein -
  F0362_RS06590 (F0362_06590) sipW 1250751..1251320 (+) 570 WP_000767788.1 signal peptidase I SipW -
  F0362_RS06595 (F0362_06595) - 1251385..1251972 (+) 588 WP_000172853.1 CalY family protein -
  F0362_RS06600 (F0362_06600) - 1252108..1252944 (+) 837 WP_149889709.1 DUF4047 domain-containing protein -
  F0362_RS06605 (F0362_06605) calY 1253372..1253965 (+) 594 WP_000053720.1 biofilm matrix protein CalY -
  F0362_RS06610 (F0362_06610) sinR 1254041..1254364 (-) 324 WP_000578872.1 helix-turn-helix domain-containing protein Regulator
  F0362_RS06615 (F0362_06615) - 1254444..1254578 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  F0362_RS06620 (F0362_06620) inhA1 1254924..1257311 (+) 2388 WP_001035956.1 M6 family metalloprotease immune inhibitor InhA1 -
  F0362_RS06625 (F0362_06625) - 1257469..1258836 (+) 1368 WP_149889710.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12375.23 Da        Isoelectric Point: 9.6238

>NTDB_id=386066 F0362_RS06610 WP_000578872.1 1254041..1254364(-) (sinR) [Bacillus sp. BS98]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETEKEARLDSDWTQLV
KDAMNSGVSKEQFREFLEFTQWKKNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=386066 F0362_RS06610 WP_000578872.1 1254041..1254364(-) (sinR) [Bacillus sp. BS98]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGACGAAACAGAAAAGGAAGCTCGCCTAGACTCCGATTGGACACAGCTCGTT
AAAGACGCAATGAACTCTGGTGTCTCTAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAGTGGAAGAAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment