Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   F0362_RS00225 Genome accession   NZ_CP043830
Coordinates   40444..40728 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. BS98     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35444..45728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0362_RS00190 (F0362_00190) tmk 35597..36223 (+) 627 WP_000677211.1 dTMP kinase -
  F0362_RS00195 (F0362_00195) holB 36259..37242 (+) 984 WP_000754512.1 DNA polymerase III subunit delta' -
  F0362_RS00200 (F0362_00200) - 37248..38075 (+) 828 WP_000272428.1 stage 0 sporulation family protein -
  F0362_RS00205 (F0362_00205) yabA 38090..38440 (+) 351 WP_000412058.1 DNA replication initiation control protein YabA -
  F0362_RS00210 (F0362_00210) - 38562..39302 (+) 741 WP_001055365.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  F0362_RS00215 (F0362_00215) - 39289..39579 (+) 291 WP_000414346.1 GIY-YIG nuclease family protein -
  F0362_RS00220 (F0362_00220) rsmI 39548..40423 (+) 876 WP_000267800.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  F0362_RS00225 (F0362_00225) abrB 40444..40728 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  F0362_RS00230 (F0362_00230) metG 41209..43218 (+) 2010 WP_073990551.1 methionine--tRNA ligase -
  F0362_RS00235 (F0362_00235) - 43387..44154 (+) 768 WP_000895828.1 TatD family hydrolase -
  F0362_RS00240 (F0362_00240) rnmV 44374..44931 (+) 558 WP_000692838.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=386050 F0362_RS00225 WP_000843036.1 40444..40728(-) (abrB) [Bacillus sp. BS98]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=386050 F0362_RS00225 WP_000843036.1 40444..40728(-) (abrB) [Bacillus sp. BS98]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTTGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAAAAAATCATCCTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment