Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   HHJ62_RS08770 Genome accession   NZ_CP051636
Coordinates   1837030..1837749 (+) Length   239 a.a.
NCBI ID   WP_035688438.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain ADL-AP17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1832030..1842749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ62_RS08735 (HHJ62_08735) tolR 1832513..1832935 (+) 423 WP_035688444.1 colicin uptake protein TolR -
  HHJ62_RS08740 (HHJ62_08740) tolA 1832952..1834166 (+) 1215 WP_035688442.1 cell envelope integrity protein TolA -
  HHJ62_RS08745 (HHJ62_08745) tolB 1834200..1835507 (+) 1308 WP_035688440.1 Tol-Pal system beta propeller repeat protein TolB -
  HHJ62_RS08750 (HHJ62_08750) pal 1835518..1835970 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  HHJ62_RS08765 (HHJ62_08765) comN 1836508..1837029 (+) 522 WP_017806950.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  HHJ62_RS08770 (HHJ62_08770) comO 1837030..1837749 (+) 720 WP_035688438.1 type II secretion system protein J Machinery gene
  HHJ62_RS08775 (HHJ62_08775) - 1837751..1838416 (+) 666 WP_051128113.1 DUF2572 family protein -
  HHJ62_RS08780 (HHJ62_08780) comQ 1838397..1838702 (+) 306 WP_035688436.1 DUF5374 domain-containing protein Machinery gene
  HHJ62_RS08785 (HHJ62_08785) recC 1838714..1842118 (+) 3405 WP_035688434.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27777.03 Da        Isoelectric Point: 8.2091

>NTDB_id=386013 HHJ62_RS08770 WP_035688438.1 1837030..1837749(+) (comO) [Avibacterium paragallinarum strain ADL-AP17]
MYRRYVKGQSLLSLMLSISLSSFLLIIIFSFYTYSQKQNQEIRIQLYLQNEIERVLQLMAKDLRRSGFRAVTEKLQVSNF
PFFELDDKGTSVLISQASGEPLGSCVLFFYDLDSSGCIGSTYTKGLCIQDGKNQVREIERELFGYRLNKKMLETRLTYKN
TVNQECSQEQCRTYTQQPACEKGGWVDLFDNKEIAISQFFLQWLKEGELIEAHLMGYLVKQPHIQYKSHIVIPLLNQGR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=386013 HHJ62_RS08770 WP_035688438.1 1837030..1837749(+) (comO) [Avibacterium paragallinarum strain ADL-AP17]
ATGTATCGTCGTTATGTTAAAGGGCAGAGTTTATTATCTTTAATGCTTTCTATTTCTTTATCTTCTTTCTTATTAATCAT
TATTTTTTCTTTTTATACCTATAGCCAAAAGCAAAACCAAGAAATACGAATTCAATTATATTTACAAAATGAAATTGAAC
GCGTGCTTCAATTAATGGCGAAAGATTTACGGCGTTCTGGATTTCGGGCAGTTACAGAAAAACTGCAAGTTTCCAATTTT
CCTTTTTTTGAATTGGATGACAAAGGAACAAGCGTATTGATTAGCCAAGCTTCAGGGGAGCCACTGGGAAGTTGTGTACT
TTTTTTCTATGATTTAGATAGTTCTGGCTGTATTGGCTCAACTTATACCAAAGGGCTTTGCATTCAAGATGGAAAAAATC
AAGTAAGAGAGATTGAACGTGAGTTATTTGGTTATCGCTTAAATAAAAAAATGTTAGAAACCCGTTTAACTTATAAAAAT
ACGGTAAATCAGGAATGTTCTCAAGAACAATGTCGAACTTATACTCAGCAACCTGCATGCGAAAAAGGAGGATGGGTGGA
TTTATTTGATAACAAAGAAATTGCCATTTCTCAGTTTTTCTTACAATGGCTAAAAGAAGGAGAATTAATTGAAGCCCATC
TTATGGGATATTTAGTCAAACAACCGCATATCCAGTATAAAAGTCATATTGTTATTCCATTGCTTAATCAAGGTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

47.479

99.582

0.473