Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   F0U64_RS25040 Genome accession   NZ_CP043820
Coordinates   5526028..5526984 (-) Length   318 a.a.
NCBI ID   WP_070543178.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain AX1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5521028..5531984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U64_RS25035 (F0U64_25035) - 5524236..5525894 (+) 1659 WP_024070383.1 CYTH and CHAD domain-containing protein -
  F0U64_RS25040 (F0U64_25040) pilA 5526028..5526984 (-) 957 WP_070543178.1 signal recognition particle-docking protein FtsY Machinery gene
  F0U64_RS25045 (F0U64_25045) rsmD 5527445..5528011 (+) 567 WP_006385943.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  F0U64_RS25050 (F0U64_25050) coaD 5528070..5528573 (+) 504 WP_006385942.1 pantetheine-phosphate adenylyltransferase -
  F0U64_RS25055 (F0U64_25055) - 5528752..5529003 (+) 252 WP_006385941.1 YfhL family 4Fe-4S dicluster ferredoxin -
  F0U64_RS25060 (F0U64_25060) - 5529000..5530220 (+) 1221 WP_049055629.1 benzoate/H(+) symporter BenE family transporter -
  F0U64_RS25065 (F0U64_25065) - 5530285..5530671 (-) 387 WP_054437790.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 33437.52 Da        Isoelectric Point: 8.5379

>NTDB_id=386001 F0U64_RS25040 WP_070543178.1 5526028..5526984(-) (pilA) [Achromobacter xylosoxidans strain AX1]
MAPAPAAPEPEAAPKKASWLSRLKQGLSRTGQSIGGIFVGVKVDENLFEELESALIMADAGLEATEKLLTALRARVKKER
IEDPAKVKAALRQLLADHLRPLERAFDLKRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQL
IEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARGMGVVMVDTAGRLPTQLHLMEELKKIRRVIGKADPAAPHEVLLVVDG
NTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 957 bp        

>NTDB_id=386001 F0U64_RS25040 WP_070543178.1 5526028..5526984(-) (pilA) [Achromobacter xylosoxidans strain AX1]
ATCGCGCCGGCGCCCGCCGCGCCCGAGCCGGAAGCGGCGCCCAAGAAGGCGTCCTGGCTGTCGCGGCTCAAGCAGGGCCT
GTCGCGCACCGGCCAGAGCATTGGCGGCATCTTCGTCGGCGTCAAGGTCGACGAGAACCTGTTCGAGGAACTCGAATCGG
CGCTCATTATGGCCGATGCCGGCCTGGAAGCCACCGAGAAGCTGCTGACCGCGCTGCGCGCGCGGGTCAAGAAAGAACGC
ATCGAGGACCCGGCCAAGGTCAAGGCCGCGCTGCGCCAACTGCTGGCCGACCACCTGCGTCCGCTGGAGCGCGCCTTCGA
CCTGAAGCGCGCGCAGCCGCTGGTGGTGATGATCGCGGGCGTCAACGGCGCGGGCAAGACCACGTCGATCGGCAAGCTGG
CGCACACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCCGCCGCGCGCGAGCAACTG
ATCGAATGGGGCAGCCGCAACAACGTCACCGTGATCTCGCAGGATGGCGGCGACCCGGCGGCGGTGGCGTTCGACTCTGT
CAACGCCGGCCGCGCGCGCGGCATGGGCGTGGTGATGGTGGACACGGCCGGCCGCCTGCCGACCCAGCTGCACCTGATGG
AAGAACTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGATCCGGCCGCGCCGCACGAGGTGCTGCTGGTGGTGGACGGC
AACACCGGCCAGAACGCGCTGGCGCAGATCCGCGCGTTCGACGCGGCCATCAACCTGACGGGCCTGGTCGTGACCAAGCT
GGACGGCACCGCCAAGGGCGGCACGCTGGCGGCGGTGGCGGCGGGCAGCCAGGGCGTGCGGCCGATCCCGGTGTACTGGA
TCGGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCGTTCGTGGCCGACGAATTCGCCGGAGCCTTGCTGGCCGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(114-316)

SRP54-type protein, helical bundle domain (SRP54_N)

(32-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.17

96.226

0.56

Multiple sequence alignment